CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1946 contig Csv1_Contig1946:641..1059. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_MORIN (Maturase K OS=Morus indica GN=matK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.028e-45
Identity = 87/128 (67.97%), Postives = 103/128 (80.47%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWKYYLV LWQ HF   SQPGR+ +N L   K++ +FLGYLS +++N  +VRSQMLENSFL+DN+MKK+DT VPI  LIGSL K +FCN LGHP+SKSTW+D SD  +IDRFV ICRNL HYYSGS
Sbjct:  294 MNKWKYYLVLLWQCHFYVWSQPGRMYINQLC--KHSFSFLGYLSSMQINLSVVRSQMLENSFLMDNAMKKIDTLVPISLLIGSLDKMKFCNVLGHPVSKSTWADSSDFDIIDRFVCICRNLFHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_MORAL (Maturase K OS=Morus alba GN=matK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.028e-45
Identity = 87/128 (67.97%), Postives = 103/128 (80.47%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWKYYLV LWQ HF   SQPGR+ +N L   K++ +FLGYLS +++N  +VRSQMLENSFL+DN+MKK+DT VPI  LIGSL K +FCN LGHP+SKSTW+D SD  +IDRFV ICRNL HYYSGS
Sbjct:  294 MNKWKYYLVLLWQCHFYVWSQPGRMYINQLC--KHSFSFLGYLSSMQINLSVVRSQMLENSFLMDNAMKKIDTLVPISLLIGSLDKMKFCNVLGHPVSKSTWADSSDFDIIDRFVCICRNLFHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_LOACH (Maturase K OS=Loasa chilensis GN=matK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.028e-45
Identity = 88/129 (68.22%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQ  R+ +N L    + ++FLGYLS VRLN  +VRSQMLENSFLIDN++KK +T VPII LIGSL KA+FCN LGHPISK  W+D SDS +IDRF RICRNLSHY+SGS
Sbjct:  292 LMNKWKYYLVNSWQCHFYVWSQSRRIYINQL--SNHFLDFLGYLSSVRLNPSMVRSQMLENSFLIDNAIKKFETIVPIIPLIGSLAKAKFCNVLGHPISKPVWADLSDSDIIDRFGRICRNLSHYHSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_HEDHE (Maturase K OS=Hedera helix GN=matK PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 6.028e-45
Identity = 86/129 (66.67%), Postives = 100/129 (77.52%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KW YY V LWQ HF   SQPGR+ +N LY   ++++ LGYLS  RLN  +VR QMLENSFLIDN++ K DT VPII LIGSL KA+FCN LGHPISK+ W+D SDS +IDRF RICRNLSHY+SGS
Sbjct:  293 LMKKWTYYFVNLWQCHFYLWSQPGRICINQLY--NHSLDLLGYLSSARLNPSMVRGQMLENSFLIDNAINKFDTIVPIIPLIGSLAKAKFCNVLGHPISKAVWTDLSDSDIIDRFGRICRNLSHYHSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_GYMDI (Maturase K OS=Gymnocladus dioica GN=matK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.028e-45
Identity = 84/128 (65.62%), Postives = 102/128 (79.69%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWKYYL+ LWQ HF   SQPG++ +N L   +++  FLGY S VRLN  +VRSQMLENSF+I+N MKK+DT +PII LI SL KA+FCN LGHPISK  W+D SD ++IDRF+RICRNLSHYY+GS
Sbjct:  293 MNKWKYYLIHLWQCHFYVWSQPGKIHINQL--SEHSFYFLGYFSNVRLNPSVVRSQMLENSFIIENVMKKLDTIIPIIPLIRSLAKAKFCNVLGHPISKPVWADSSDFYIIDRFLRICRNLSHYYNGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_DIOKA (Maturase K OS=Diospyros kaki GN=matK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.028e-45
Identity = 89/129 (68.99%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ +F   SQPGR+  N L    ++++ LGYLS VRLN  +VRSQMLENSFLI N++KK DT VPII LIGSL+KA+FCN LGHPISK  WSD SDS +IDRF RI RNLSHYYSGS
Sbjct:  292 LMNKWKYYLVNFWQCYFYMWSQPGRIHRNQL--SNHSLDLLGYLSSVRLNPSIVRSQMLENSFLIGNAIKKFDTIVPIIPLIGSLSKAKFCNVLGHPISKPVWSDLSDSDIIDRFGRIYRNLSHYYSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ROSFO (Maturase K OS=Rosa foetida GN=matK PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.873e-45
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+ +N L   K++ +FLGYLS +R N  +VRSQ+LENSFL+DN+MKK+DT  PII +IGSL K +FCN  GHPISKS+W+D SDS +IDRFVRI  NLSHYYSGS
Sbjct:  291 LMNKWKYYLVHFWQCHFYVWSQPGRIHINQL--SKHSFDFLGYLSSIRPNISVVRSQLLENSFLMDNAMKKLDTLFPIIPMIGSLAKVKFCNTSGHPISKSSWADSSDSDIIDRFVRIGENLSHYYSGS 417          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_HAMVI (Maturase K OS=Hamamelis virginiana GN=matK PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.028e-44
Identity = 88/129 (68.22%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+ +N L    ++ +FLGYLS V LN  +VRSQMLENSF+IDN++KK D  VPII LIGSL KA+FCN LGHPISK   +D SDS +IDRFVRICRNLSHY+SGS
Sbjct:  292 LMNKWKYYLVNFWQCHFYVWSQPGRIYINQL--SNHSFDFLGYLSSVGLNPSVVRSQMLENSFIIDNAIKKFDIIVPIIPLIGSLAKAKFCNVLGHPISKPARADSSDSDIIDRFVRICRNLSHYHSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_HAMMO (Maturase K OS=Hamamelis mollis GN=matK PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.028e-44
Identity = 88/129 (68.22%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+ +N L    ++ +FLGYLS V LN  +VRSQMLENSF+IDN++KK D  VPII LIGSL KA+FCN LGHPISK   +D SDS +IDRFVRICRNLSHY+SGS
Sbjct:  292 LMNKWKYYLVNFWQCHFYVWSQPGRIYINQL--SNHSFDFLGYLSSVGLNPSVVRSQMLENSFIIDNAIKKFDIIVPIIPLIGSLAKAKFCNVLGHPISKPARADSSDSDIIDRFVRICRNLSHYHSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_HAMJA (Maturase K OS=Hamamelis japonica GN=matK PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.028e-44
Identity = 88/129 (68.22%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+ +N L    ++ +FLGYLS V LN  +VRSQMLENSF+IDN++KK D  VPII LIGSL KA+FCN LGHPISK   +D SDS +IDRFVRICRNLSHY+SGS
Sbjct:  292 LMNKWKYYLVNFWQCHFYVWSQPGRIYINQL--SNHSFDFLGYLSSVGLNPSVVRSQMLENSFIIDNAIKKFDIIVPIIPLIGSLAKAKFCNVLGHPISKPARADSSDSDIIDRFVRICRNLSHYHSGS 418          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_MORIN6.028e-4567.97Maturase K OS=Morus indica GN=matK PE=3 SV=1[more]
MATK_MORAL6.028e-4567.97Maturase K OS=Morus alba GN=matK PE=3 SV=1[more]
MATK_LOACH6.028e-4568.22Maturase K OS=Loasa chilensis GN=matK PE=3 SV=1[more]
MATK_HEDHE6.028e-4566.67Maturase K OS=Hedera helix GN=matK PE=3 SV=2[more]
MATK_GYMDI6.028e-4565.63Maturase K OS=Gymnocladus dioica GN=matK PE=3 SV=1[more]
MATK_DIOKA6.028e-4568.99Maturase K OS=Diospyros kaki GN=matK PE=3 SV=1[more]
MATK_ROSFO7.873e-4566.67Maturase K OS=Rosa foetida GN=matK PE=3 SV=1[more]
MATK_HAMVI1.028e-4468.22Maturase K OS=Hamamelis virginiana GN=matK PE=3 SV... [more]
MATK_HAMMO1.028e-4468.22Maturase K OS=Hamamelis mollis GN=matK PE=3 SV=1[more]
MATK_HAMJA1.028e-4468.22Maturase K OS=Hamamelis japonica GN=matK PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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