CB305001

Overview
NameCB305001
Unique NameCB305001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 64/121 (52.89%), Postives = 82/121 (67.77%), Query Frame = -3 
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + C+GET  + E+G T  V A Q  A+   +  S ++ VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A+VA    I YGGSVN AN  EL  QPD+DG LVGGASLK +
Sbjct:  124 VLCIGETEAENEAGKTEEVCARQIDAVLKTQGASAFEGVVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKAD 240
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 61/113 (53.98%), Postives = 73/113 (64.60%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I C GETLEQRE G T  VV  Q +     I +  N+V+AYEPVWAIGTGK AT  QA+EVH  +R  + D    E A   RI YGGSV  +N KEL + P++DG L+GGASL
Sbjct:  124 IMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAKELFSMPNIDGGLIGGASL 236
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_CHLAA (Triosephosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=tpiA PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 60/116 (51.72%), Postives = 77/116 (66.38%), Query Frame = -3 
Query:  302 IACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            I CVGE+  QR++G    +V  Q +A   ++      NVV+AYEP+WAIGTG  ATPA AQ +HA +R  L +   +E+AA+ RI YGGSV   N  EL AQPD+DG LVGGASL+
Sbjct:  124 IVCVGESKPQRDAGQAEPIVTAQVRAALLEVPPDQMANVVIAYEPIWAIGTGDTATPADAQAMHAAIRATLAELYGSEIAATVRIQYGGSVKPDNIDELMAQPDIDGALVGGASLQ 239
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_SHESH (Triosephosphate isomerase OS=Shewanella sediminis (strain HAW-EB3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 61/115 (53.04%), Postives = 79/115 (68.70%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GG SL
Sbjct:  132 ILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPYIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSL 245
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAE (Triosephosphate isomerase OS=Pseudomonas aeruginosa GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 61/118 (51.69%), Postives = 80/118 (67.80%), Query Frame = -3 
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + CVGET  +RE+G T+ VVA Q  ++ ++  +  +   V+AYEPVWAIGTG  A+PAQAQEVHA +R  L    +AEVA   R++YGGSV  A+  EL   PD+DG LVGGASL  +
Sbjct:  124 VLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAE-NAEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNAD 240
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAB (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 61/118 (51.69%), Postives = 80/118 (67.80%), Query Frame = -3 
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + CVGET  +RE+G T+ VVA Q  ++ ++  +  +   V+AYEPVWAIGTG  A+PAQAQEVHA +R  L    +AEVA   R++YGGSV  A+  EL   PD+DG LVGGASL  +
Sbjct:  124 VLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAE-NAEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNAD 240
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA8 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain LESB58) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 61/118 (51.69%), Postives = 80/118 (67.80%), Query Frame = -3 
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + CVGET  +RE+G T+ VVA Q  ++ ++  +  +   V+AYEPVWAIGTG  A+PAQAQEVHA +R  L    +AEVA   R++YGGSV  A+  EL   PD+DG LVGGASL  +
Sbjct:  124 VLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAE-NAEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNAD 240
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA7 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain PA7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 61/118 (51.69%), Postives = 80/118 (67.80%), Query Frame = -3 
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + CVGET  +RE+G T+ VVA Q  ++ ++  +  +   V+AYEPVWAIGTG  A+PAQAQEVHA +R  L    +AEVA   R++YGGSV  A+  EL   PD+DG LVGGASL  +
Sbjct:  124 VLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAE-NAEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNAD 240
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I CVGE LE+RE+G    VVA Q +     +   D   ++LAYEPVWAIGTGK AT  QAQE+HA +RK +      EVA    I+YGGS N AN KEL ++ DVDG L+GGASL
Sbjct:  125 IFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGLIGGASL 239
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I CVGE LE+RE+G    VVA Q +     +   D   ++LAYEPVWAIGTGK AT  QAQE+HA +RK +      EVA    I+YGGS N AN KEL ++ DVDG L+GGASL
Sbjct:  125 IFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGLIGGASL 239
The following BLAST results are available for this feature:
BLAST of CB305001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ENT381.036e-2552.89Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_CHLPD1.036e-2553.98Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_CHLAA1.036e-2551.72Triosephosphate isomerase OS=Chloroflexus aurantia... [more]
TPIS_SHESH1.353e-2553.04Triosephosphate isomerase OS=Shewanella sediminis ... [more]
TPIS_PSEAE1.353e-2551.69Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEAB1.353e-2551.69Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEA81.353e-2551.69Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEA71.353e-2551.69Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PORGI1.353e-2553.91Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG31.353e-2553.91Triosephosphate isomerase OS=Porphyromonas gingiva... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305001 ID=CB305001; Name=CB305001; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAGGGAAAAGC
AACCATTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGAGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGAAACTCCG
GCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTGCT
GCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATTCT
AGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCTCA
GTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTA
CCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTGGA
TATTTTTTCTGCGATTGCTTTTGTTTGTTCAGCCACAACAGCCACTGTAG
ATCCTGATTCTCGCTGTTCCAGAGTCTCTCCAACACAAGCAATGA
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