CB305001

Overview
NameCB305001
Unique NameCB305001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_MYXXD (Triosephosphate isomerase OS=Myxococcus xanthus (strain DK 1622) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 65/116 (56.03%), Postives = 74/116 (63.79%), Query Frame = -3 
Query:  302 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            I CVGETL +RE+  T+AVV  Q +   E     +    VLAYEPVWAIGTG+ AT AQAQEVHA +R  ++     E A   RI YGGSV   N  EL  QPDVDG LVGGASLK
Sbjct:  129 IICVGETLAEREANQTLAVVERQVRGALEGFGAKEVAGFVLAYEPVWAIGTGRNATAAQAQEVHAAIRGLVERLYDGETAGRVRIQYGGSVKPDNAAELLGQPDVDGALVGGASLK 244
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 60/116 (51.72%), Postives = 75/116 (64.66%), Query Frame = -3 
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            I CVGETL++RE+G T  +V  Q       +S+   +V+AYEPVWAIGTGK AT  QAQ+VHA +R  ++       A   RI YGGSV  +N  EL A PD+DG L+GGASLK E
Sbjct:  125 ILCVGETLDEREAGVTDKIVTAQVVEGLADVSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGDSAARHLRIQYGGSVKPSNAAELFAMPDIDGGLIGGASLKVE 240
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_STRM5 (Triosephosphate isomerase OS=Stenotrophomonas maltophilia (strain R551-3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 63/115 (54.78%), Postives = 78/115 (67.83%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            + CVGETLEQRE+G T  V+A Q   + E +  + +   V+AYEPVWAIGTG+ AT  QAQ+VHA +R  +   + A +A S  I+YGGSV   N  EL AQPDVDG LVGGASL
Sbjct:  123 VLCVGETLEQREAGQTNVVIASQLAPVLELVGAAGFAKAVVAYEPVWAIGTGRTATKEQAQQVHAFIRGEVA-RIDARIADSLPIVYGGSVKPDNAGELFAQPDVDGGLVGGASL 236
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_SHEWM (Triosephosphate isomerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 61/115 (53.04%), Postives = 79/115 (68.70%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GG SL
Sbjct:  132 ILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSL 245
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_SHESW (Triosephosphate isomerase OS=Shewanella sp. (strain W3-18-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL
Sbjct:  132 ILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASL 245
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_SHESR (Triosephosphate isomerase OS=Shewanella sp. (strain MR-7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL
Sbjct:  132 ILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASL 245
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_SHESM (Triosephosphate isomerase OS=Shewanella sp. (strain MR-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL
Sbjct:  132 ILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASL 245
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_SHESA (Triosephosphate isomerase OS=Shewanella sp. (strain ANA-3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL
Sbjct:  132 ILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASL 245
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPW (Triosephosphate isomerase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 61/115 (53.04%), Postives = 79/115 (68.70%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GG SL
Sbjct:  132 ILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSL 245
[Close]
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPC (Triosephosphate isomerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = -3 
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL
Sbjct:  132 ILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASL 245
The following BLAST results are available for this feature:
BLAST of CB305001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYXXD1.353e-2556.03Triosephosphate isomerase OS=Myxococcus xanthus (s... [more]
TPIS_CHLP81.353e-2551.72Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_STRM51.768e-2554.78Triosephosphate isomerase OS=Stenotrophomonas malt... [more]
TPIS_SHEWM1.768e-2553.04Triosephosphate isomerase OS=Shewanella woodyi (st... [more]
TPIS_SHESW1.768e-2553.04Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESR1.768e-2553.04Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESM1.768e-2553.04Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESA1.768e-2553.04Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHEPW1.768e-2553.04Triosephosphate isomerase OS=Shewanella piezotoler... [more]
TPIS_SHEPC1.768e-2553.04Triosephosphate isomerase OS=Shewanella putrefacie... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305001 ID=CB305001; Name=CB305001; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAGGGAAAAGC
AACCATTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGAGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGAAACTCCG
GCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTGCT
GCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATTCT
AGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCTCA
GTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTA
CCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTGGA
TATTTTTTCTGCGATTGCTTTTGTTTGTTCAGCCACAACAGCCACTGTAG
ATCCTGATTCTCGCTGTTCCAGAGTCTCTCCAACACAAGCAATGA
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