CB305001

Overview
NameCB305001
Unique NameCB305001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.220e-44
Identity = 88/117 (75.21%), Postives = 97/117 (82.91%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            IAC+GE L++RE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA  TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF
Sbjct:  125 IACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKCNVSEGVAQCTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEF 241          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.900e-44
Identity = 85/117 (72.65%), Postives = 96/117 (82.05%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            IAC+GE L+QRE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR+W+K NVS  VA S RIIYGGSV G  C+ELA QPD+DGFLVGGASLKPEF
Sbjct:  124 IACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWVKTNVSEGVAQSVRIIYGGSVTGGTCRELAGQPDIDGFLVGGASLKPEF 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 2.900e-44
Identity = 87/117 (74.36%), Postives = 97/117 (82.91%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            IAC+GE L++RE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK +VS  VA STRIIYGGSV G NCKELA+Q DVDGFLVGGASLKPEF
Sbjct:  124 IACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEF 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.102e-43
Identity = 86/117 (73.50%), Postives = 97/117 (82.91%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            IAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTGK ATP QAQEVHA LR+WL DN+S EV+AS RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF
Sbjct:  123 IACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEF 239          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.102e-43
Identity = 86/117 (73.50%), Postives = 97/117 (82.91%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            IAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTGK ATP QAQEVHA LR+WL DN+S EV+AS RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF
Sbjct:  123 IACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEF 239          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.439e-43
Identity = 86/117 (73.50%), Postives = 96/117 (82.05%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            IAC+GE LE+RE+G+T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK A+P QAQEVH +LR WL+ NVS  VA S RIIYGGSV G NCKELAAQ DVDGFLVGGASLKPEF
Sbjct:  124 IACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGWLRANVSDAVADSVRIIYGGSVTGGNCKELAAQADVDGFLVGGASLKPEF 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.206e-43
Identity = 82/121 (67.77%), Postives = 99/121 (81.82%), Query Frame = -3
Query:  281 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFRYYQ 643
            +AC+GE L++RE+G T  VV E T+ IA+ + +W  VVLAYEPVWAIGTGK A+P Q+QE+H +LRKWLK+NVS  VA S RIIYGGSV GA CKELA++PDVDGFLVGGASLKPEF  Y+
Sbjct:  123 VACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLKPEFVEYK 243          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 3.206e-43
Identity = 85/117 (72.65%), Postives = 97/117 (82.91%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            IAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTG+ ATP QAQEVHA LR+WL DN+S EV+AS RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF
Sbjct:  123 IACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEF 239          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 172.94 bits (437), Expect = 1.218e-42
Identity = 84/117 (71.79%), Postives = 95/117 (81.20%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            IAC+GE L++RE+G T  VV EQTK IA+ + +W+ VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK +V   VA STRIIYGGSV GA CKELA+QPDVDGF V GASLKPEF
Sbjct:  125 IACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLKPEF 241          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.078e-42
Identity = 84/118 (71.19%), Postives = 96/118 (81.36%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEF 643
            IAC+GE LE+RE+G T  V  +Q KA A+ + +WDNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG NC ELA Q D+DGFLVGGASLK PEF
Sbjct:  191 IACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEF 308          
The following BLAST results are available for this feature:
BLAST of CB305001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_RAT2.220e-4475.21Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_XENLA2.900e-4472.65Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_CHICK2.900e-4474.36Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPIS_DROYA1.102e-4373.50Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]
TPIS_DROSI1.102e-4373.50Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPISA_DANRE1.439e-4373.50Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_LATCH3.206e-4367.77Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_DROME3.206e-4372.65Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_PIG1.218e-4271.79Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIC_SPIOL2.078e-4271.19Triosephosphate isomerase, chloroplastic OS=Spinac... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305001 ID=CB305001; Name=CB305001; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAGGGAAAAGC
AACCATTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGAGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGAAACTCCG
GCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTGCT
GCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATTCT
AGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCTCA
GTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTA
CCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTGGA
TATTTTTTCTGCGATTGCTTTTGTTTGTTCAGCCACAACAGCCACTGTAG
ATCCTGATTCTCGCTGTTCCAGAGTCTCTCCAACACAAGCAATGA
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