CB305001

Overview
NameCB305001
Unique NameCB305001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.791e-39
Identity = 78/119 (65.55%), Postives = 94/119 (78.99%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            I C+GETLE+RE+  T+ VV  Q  A A+++S   W  VV+AYEPVWAIGTGKVAT  QAQEVH+ +RKWLKD +SAE A +TRIIYGGSV+  NCK+LA + D+DGFLVGGASLKP F
Sbjct:  123 IFCIGETLEEREANKTIDVVTRQLNAAAKELSKEQWAKVVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADIDGFLVGGASLKPAF 241          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.394e-38
Identity = 83/119 (69.75%), Postives = 92/119 (77.31%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEF 643
            IAC+GE LE+RE+G T  V  +Q K+ A      WDNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG N   LAAQ DVDGFLVGGASLK PEF
Sbjct:  125 IACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEF 243          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.394e-38
Identity = 83/120 (69.17%), Postives = 87/120 (72.50%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            IAC+GETL +RES  T  V   Q KAIA KI +   W  VV+AYEPVWAIGTGKVATP QAQEVH  LRKW K N    V    RIIYGGSV  ANCKELA Q DVDGFLVGGASLKPEF
Sbjct:  125 IACIGETLSERESNKTEEVCVRQLKAIANKIKSADEWKRVVVAYEPVWAIGTGKVATPQQAQEVHNFLRKWFKTNAPNGVDEKIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEF 244          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.394e-38
Identity = 81/120 (67.50%), Postives = 88/120 (73.33%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            +AC+GETL +RESG T  V   Q  AIA KI +   W  VV+AYEPVWAIGTGKVA+P QAQEVH  LRKW K N  + V    RIIYGGSV  ANCKELA Q DVDGFLVGGASLKPEF
Sbjct:  125 VACIGETLSERESGKTEEVCVRQLNAIANKIKSIDEWKRVVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEF 244          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.394e-38
Identity = 74/117 (63.25%), Postives = 92/117 (78.63%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            I C GE+ + R++G T+  V  Q  A+A++I++W NVV+AYEP+WAIGTG VAT  QAQEVHA +R WLK NVS +VA  TRI+YGGSVN  NCK+LA + D+DGFLVGGASLKPEF
Sbjct:  124 IWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEF 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.378e-38
Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            IAC+GETLE+RESG T  VV  Q KA+   I + W+N+VLAYEPVWAIGTGK ATP QAQ+VH  LR WL  NVS  V+ + RI YGGSV  AN KELA+  D+DGFLVGGASLKPEF
Sbjct:  123 IACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPEF 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.106e-38
Identity = 75/119 (63.03%), Postives = 95/119 (79.83%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            I C+GETL++RE G T AV  EQ  A+ +++   +W N+V+AYEPVWAIGTGKVAT +QAQE H ++RK+L   VS +VA+ TR+IYGGSVN AN K+LA+Q D+DGFLVGGASLKPEF
Sbjct:  124 ILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGFLVGGASLKPEF 242          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.036e-38
Identity = 76/119 (63.87%), Postives = 93/119 (78.15%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            I C+GETLE+RE+  T+ VV +Q  A A++++   W  VV+AYEPVWAIGTGKVAT  QAQEVHA +RKWL D +S E + +TRIIYGGSV+  NC+ELA + DVDGFLVGGASLKP F
Sbjct:  125 IFCIGETLEEREADKTIEVVTKQLNAAAKELTKEQWSKVVIAYEPVWAIGTGKVATTQQAQEVHAAIRKWLADAISPEASENTRIIYGGSVSEKNCRELAQERDVDGFLVGGASLKPAF 243          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.541e-37
Identity = 76/119 (63.87%), Postives = 91/119 (76.47%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            IAC+GETL++RESG T  VV  Q  AIA+K+  ++W  VV+AYEPVWAIGTGKVATP QAQE HA +R W+   + A+VA   RI+YGGSVNG N + L  Q DV+GFLVGGASLKPEF
Sbjct:  124 IACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEF 242          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.541e-37
Identity = 73/102 (71.57%), Postives = 85/102 (83.33%), Query Frame = -3
Query:  338 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 643
            IAC+GETL++RE+G T AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK ATP QAQEVH  LRKW  DNVSA+V+AS RI YGGSV  ANC+ELAA+PD
Sbjct:  105 IACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAKPD 206          
The following BLAST results are available for this feature:
BLAST of CB305001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_EMENI4.791e-3965.55Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_STELP1.394e-3869.75Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_SCHMA1.394e-3869.17Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_SCHJA1.394e-3867.50Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_NEUCR1.394e-3863.25Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_BOMMO2.378e-3866.95Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_COPC73.106e-3863.03Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_ASPOR9.036e-3863.87Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_TRYBB1.541e-3763.87Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_AEDTO1.541e-3771.57Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305001 ID=CB305001; Name=CB305001; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAGGGAAAAGC
AACCATTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGAGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGAAACTCCG
GCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTGCT
GCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATTCT
AGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCTCA
GTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTA
CCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTGGA
TATTTTTTCTGCGATTGCTTTTGTTTGTTCAGCCACAACAGCCACTGTAG
ATCCTGATTCTCGCTGTTCCAGAGTCTCTCCAACACAAGCAATGA
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