CB305001

Overview
NameCB305001
Unique NameCB305001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:471..1114. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.057e-30
Identity = 62/114 (54.39%), Postives = 79/114 (69.30%), Query Frame = -3
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEKI-SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            I C+GE L  R+S +T  +++EQ K  A      W  +V+AYEPVWAIGTG VATP +AQ+ H  +RKW+ + VS +VA  T I+YGGSVN  NC  L+ Q D+DGFLVGGASL
Sbjct:  127 ILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKIVIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGFLVGGASL 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 69/116 (59.48%), Postives = 83/116 (71.55%), Query Frame = -3
Query:  302 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            I CVGETL+QRE+G T +VVAEQ   +   I+  D   +V+AYEPVWAIGTGK ATPA AQEVHA LRK L+   +AE A   RI+YGGS+   N KEL A  D+DG L+GGA+LK
Sbjct:  123 IVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRKQLQAK-NAEAAMQVRILYGGSMKPENAKELLAMSDIDGGLIGGAALK 237          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.018e-29
Identity = 70/118 (59.32%), Postives = 82/118 (69.49%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            I CVGETLEQRESG T +VV  Q +   + ++  D  +VV+AYEPVWAIGTGK ATP QAQEVHA +R  +KD    EVA   RI YGGSV  +N KEL   PD+DG L+GGASL  E
Sbjct:  125 IMCVGETLEQRESGVTKSVVETQVRGGLKDLTAEDMKSVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAE 242          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.001e-28
Identity = 66/118 (55.93%), Postives = 84/118 (71.19%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + C+GETLE+RE+  T  VV  Q KA+ +   I   +N V+AYEPVWAIGTGKVA+  QAQ+VHA +R WL +  S  VAA  +I+YGGSV  ++ KEL AQPD+DG LVGGA+L  E
Sbjct:  124 VLCIGETLEERETDKTFNVVETQLKAVIDVSGIDALENAVIAYEPVWAIGTGKVASSEQAQDVHAHIRTWLAEQ-SKVVAAKVQILYGGSVKASSAKELFAQPDIDGGLVGGAALLVE 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.970e-28
Identity = 66/116 (56.90%), Postives = 79/116 (68.10%), Query Frame = -3
Query:  302 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            I CVGETLEQRE+G T  VV  Q  A+   I+  D   +V+AYEPVWAIGTGK ATP  AQEVH  LR+ L    +A+ A   RI+YGGS+   N KEL A PD+DG L+GGA+LK
Sbjct:  123 IVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRRRLHAK-NAQAATEVRILYGGSMKPDNAKELLAMPDIDGGLIGGAALK 237          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSEF5 (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.107e-27
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + CVGETLEQRE+G T+ VV  Q  +I E+  +  + N V+AYEPVWAIGTG  ATP QAQ+VHA +R  L    ++EVA   R++YGGSV  AN  EL   PD+DG L+GGASL  +
Sbjct:  124 VLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRAQLAAE-NSEVARGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNAD 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 63/118 (53.39%), Postives = 80/118 (67.80%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + C+GETLE+RE+G T+ VV  Q  +I E   +  + N V+AYEPVWAIGTG  ATP QAQ+VHA +R  L     AEVAA  +++YGGSV  AN  EL   PD+DG L+GGASL  +
Sbjct:  124 VLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAE-DAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNAD 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PELPD (Triosephosphate isomerase OS=Pelobacter propionicus (strain DSM 2379) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.888e-27
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = -3
Query:  302 IACVGETLEQRESGSTVAVVAEQ-TKAIAEKISN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            I CVGET+E+RES +T  VV  Q T A+A  +S+ +  +V+AYEPVWAIGTGK AT  QAQEVH  +R  +  ++S  +A S RI+YGGSV   N + L AQPD+DG L+GGASLK
Sbjct:  124 IICVGETMEERESRATFTVVGRQVTAALAGFLSHEFSRIVIAYEPVWAIGTGKTATDQQAQEVHCYIRNLVTMSISQAIADSLRILYGGSVKPDNIRGLMAQPDIDGALIGGASLK 239          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPF (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.466e-27
Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + CVGETLEQRE+G T+ VV  Q  +I E+  +  + N V+AYEPVWAIGTG  ATP QAQ+VH  +R+ L    ++EVA   R++YGGSV  AN  EL   PD+DG L+GGASL  +
Sbjct:  124 VLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHKAIREQLAAE-NSEVARGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNAD 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.466e-27
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            I CVGETL++RE G T  VV  Q K   E +++  ++V+AYEPVWAIGTGK A+  QAQEVHA +R  +    S   AA  RI YGGSV  +N +EL A PD+DG L+GGASL  E
Sbjct:  125 ILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIRATVAGLYSEPAAAGVRIQYGGSVKPSNAEELFAMPDIDGGLIGGASLNAE 240          
The following BLAST results are available for this feature:
BLAST of CB305001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DICDI9.057e-3054.39Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_JANMA1.545e-2959.48Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_CHLT32.018e-2959.32Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_PSYIN1.001e-2855.93Triosephosphate isomerase OS=Psychromonas ingraham... [more]
TPIS_HERAR4.970e-2856.90Triosephosphate isomerase OS=Herminiimonas arsenic... [more]
TPIS_PSEF51.107e-2754.24Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_PSEPG1.446e-2753.39Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PELPD1.888e-2756.03Triosephosphate isomerase OS=Pelobacter propionicu... [more]
TPIS_PSEPF2.466e-2753.39Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_PROA22.466e-2754.31Triosephosphate isomerase OS=Prosthecochloris aest... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305001 ID=CB305001; Name=CB305001; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAGGGAAAAGC
AACCATTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGAGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGAAACTCCG
GCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTGCT
GCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATTCT
AGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCTCA
GTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTA
CCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTGGA
TATTTTTTCTGCGATTGCTTTTGTTTGTTCAGCCACAACAGCCACTGTAG
ATCCTGATTCTCGCTGTTCCAGAGTCTCTCCAACACAAGCAATGA
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