CB305001

Overview
NameCB305001
Unique NameCB305001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPW (Triosephosphate isomerase OS=Pseudomonas putida (strain W619) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.221e-27
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + C+GETLE+RE+G T+ VV  Q  ++ +   I+ + N V+AYEPVWAIGTG  A+P QAQ+VHA +RK L     AEVA + +++YGGSV  AN  EL   PD+DG L+GGASL  +
Sbjct:  124 VLCIGETLEEREAGKTLEVVGRQLSSVIDAFGIAAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQLAAK-DAEVAQNVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNAD 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSEE4 (Triosephosphate isomerase OS=Pseudomonas entomophila (strain L48) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.207e-27
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + C+GETL +RE+G T+ VV  Q  ++ +   I  + N V+AYEPVWAIGTG  A+P QAQ+VHA +RK L   + AEVAA+ +++YGGSV  AN  EL   PD+DG L+GGASL  +
Sbjct:  124 VLCIGETLAEREAGETLKVVGRQLSSVIDAFGIKAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQLA-AMDAEVAANVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNAD 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_OCEIH (Triosephosphate isomerase OS=Oceanobacillus iheyensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.207e-27
Identity = 65/118 (55.08%), Postives = 78/118 (66.10%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            I CVGETL+QRE+  T+ +V EQ K     ++N      ++AYEPVWAIGTGK AT  QA EV  E+RK + +  SA+VA    I YGGSV  AN  EL AQ D+DG LVGGASL PE
Sbjct:  124 IVCVGETLDQREANETMNIVGEQVKQAVAGLTNEQVAETIIAYEPVWAIGTGKTATSEQANEVCTEIRKVVAEVTSADVAEKVIIQYGGSVKPANVDELLAQSDIDGALVGGASLDPE 241          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 121.324 bits (303), Expect = 4.207e-27
Identity = 66/119 (55.46%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  293 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 643
            I CVGETLE+RE G T  VV +Q +     +   +   VV+AYEPVWAIGTG+VATP QAQEVHA +RK L +    E A S RI+YGGS+   N   L  Q D+DG LVGGASLK  F
Sbjct:  524 ILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKESF 642          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.495e-27
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = -3
Query:  305 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 643
            + C+GETLEQ E+G T AVV  Q +A+  K  I++ +N V+ YEPVWAIGTGK ATP  AQE+ A +R WL +   A VA   +I+YGGSV  AN  EL  Q D+DG LVGGASL
Sbjct:  124 VLCIGETLEQFEAGETKAVVEAQLQAVVTKSGITSLNNAVIGYEPVWAIGTGKTATPEIAQEIPAHIRSWLAEQ-DAAVANKVQILYGGSVKPANSAELFGQADIDGGLVGGASL 237          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPK (Triosephosphate isomerase OS=Pseudomonas putida (strain KT2440) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.495e-27
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + C+GETLE+RE+G T+ VV  Q  +I E   +  + + V+AYEPVWAIGTG  ATP QAQ+VHA +R  L     AEVAA  +++YGGSV  AN  EL   PD+DG L+GGASL  +
Sbjct:  124 VLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAE-DAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNAD 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PSEP1 (Triosephosphate isomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.495e-27
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + C+GETLE+RE+G T+ VV  Q  +I E   +  + + V+AYEPVWAIGTG  ATP QAQ+VHA +R  L     AEVAA  +++YGGSV  AN  EL   PD+DG L+GGASL  +
Sbjct:  124 VLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAE-DAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNAD 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.495e-27
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = -3
Query:  302 IACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  125 IFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.495e-27
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = -3
Query:  302 IACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  125 IFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_HALHL (Triosephosphate isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.176e-27
Identity = 59/118 (50.00%), Postives = 82/118 (69.49%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            I CVGETL +R++  T +VV EQ  A+ + +  + +   V+AYEPVWAIGTG+ ATP QAQ VHA +R+ +++  + E+A    I+YGGS+   N  EL AQPD+DG L+GGASL P+
Sbjct:  120 ILCVGETLAERDAERTESVVGEQLDAVMDAVGGATFQGAVIAYEPVWAIGTGRTATPEQAQAVHAFIRQRVQERDAGEIADQLPILYGGSMKADNAAELLAQPDIDGGLIGGASLDPD 237          
The following BLAST results are available for this feature:
BLAST of CB305001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PSEPW3.221e-2751.69Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEE44.207e-2751.69Triosephosphate isomerase OS=Pseudomonas entomophi... [more]
TPIS_OCEIH4.207e-2755.08Triosephosphate isomerase OS=Oceanobacillus iheyen... [more]
PGKT_THEMA4.207e-2755.46Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_VIBSA5.495e-2755.65Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]
TPIS_PSEPK5.495e-2752.54Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEP15.495e-2752.54Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_BACFR5.495e-2752.17Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN5.495e-2752.17Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_HALHL7.176e-2750.00Triosephosphate isomerase OS=Halorhodospira haloph... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305001 ID=CB305001; Name=CB305001; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAGGGAAAAGC
AACCATTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGAGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGAAACTCCG
GCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTGCT
GCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATTCT
AGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCTCA
GTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTA
CCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTGGA
TATTTTTTCTGCGATTGCTTTTGTTTGTTCAGCCACAACAGCCACTGTAG
ATCCTGATTCTCGCTGTTCCAGAGTCTCTCCAACACAAGCAATGA
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