CB305027

Overview
NameCB305027
Unique NameCB305027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.946e-30
Identity = 60/114 (52.63%), Postives = 84/114 (73.68%), Query Frame = -2
Query:  248 AALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 589
            A +KL   + LC+ V+  V +AITC QV+ +LAPCI ++R+GG  PP  CCNG++++NG A+TTPDRQAACNCLK    S+ G+N   A  LP +CGV++PYKIS +T+C+ V+
Sbjct:    5 AVIKLALVVALCMAVS--VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = -2
Query:  248 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 523
            ITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = -2
Query:  248 KLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 580
            K+ C + LC++V AP   A+TCGQVT  LAPC+ +L+  GR P   CC GV++L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:    6 KIACFVLLCMVVVAPHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 61/115 (53.04%), Postives = 77/115 (66.96%), Query Frame = -2
Query:  251 LMAALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 595
            L  A+ +V A    +L       A+TCGQV+ ++ PC+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R I G+N   AA +P +CGVSIPY IS +TDCSRV
Sbjct:    7 LAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 61/111 (54.95%), Postives = 79/111 (71.17%), Query Frame = -2
Query:  248 KLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 580
            K+ C + LC++V AP   A+TCGQVT  LAPC+ +L+  GR P   CC GV+ L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:    6 KIACFVLLCMVVVAPHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.558e-29
Identity = 64/114 (56.14%), Postives = 78/114 (68.42%), Query Frame = -2
Query:  251 AALKLVCALRLCILVTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 589
            A +KL CA+ LCI+V AP   A ITCG V+  LAPCI +L+ G       CC G+++LN AA TTPDR+ ACNCLK A  +I GIN   AAGLP  CGV IPY ISP+T+C+ V
Sbjct:    5 AVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.558e-29
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = -2
Query:  251 ILVTAPVTNAI-TCGQVTGSLAPCIAFLRTGGRFPPP-PCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 553
            +L T P   A+ TCGQVTG+LAPC+ +LR+    P P  CCN VR LN AARTT D++ AC CLKQ   ++ G+N N AAGLP +CGV+IPYKISP TDC+RV
Sbjct:   17 VLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.558e-29
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = -2
Query:  248 ALKLVCALRLCILVTAPVTN-AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 586
            ++KL C + +  ++ AP+   AI+CG VTG L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:    4 SMKLACVVLVMCMIVAPMAEGAISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.442e-29
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = -2
Query:  248 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 523
            ITCGQV+ SLAPCI ++R GG  PP  CCNG+R++N  ARTTPDR+ ACNCLKQ   SI G+N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.719e-29
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = -2
Query:  251 ALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 586
            A+     + L +L  A    AI+CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   + G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct:    8 AVVATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
The following BLAST results are available for this feature:
BLAST of CB305027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP_PYRCO3.946e-3052.63Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUPE5.153e-3064.13Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_SOLLC1.499e-2954.95Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP2_SORBI1.958e-2953.04Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_SOLPN1.958e-2954.95Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP_SPIOL2.558e-2956.14Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_DAUCA2.558e-2959.22Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP5_LENCU2.558e-2953.51Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP1_PRUAR7.442e-2963.04Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_MAIZE9.719e-2954.46Non-specific lipid-transfer protein OS=Zea mays PE... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_A08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_A08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305027 ID=CB305027; Name=CB305027; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAATACCACAAAATAACTAG
AATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGATATTA
AAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGA
CTCGTTCGGACAAAGAATTTAACATATATATTCTTTATTTATTTATTCTT
CTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCT
GACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTC
CACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGATT
GATCGGTAAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGT
GGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTG
GAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAG
CCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCACCAG
AATGCACAAACGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGAATTT
TTCAGGGAGGCTTTTGCTTGGTTATAGCTAGTTAT
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