CB305027

Overview
NameCB305027
Unique NameCB305027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.300e-28
Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = -2
Query:  248 KLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 580
            K+ C + LC++V AP   A+TCGQVT +LAPC+ +L   G  P   CC GV+ L G A+TT DRQ AC CLK A  S  G++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:    6 KIACFVLLCMVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.300e-28
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = -2
Query:  248 LKLVCALRLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 583
            +KL C +  C++V  P+T+  A++CG V+G +APCI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:    5 MKLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.228e-28
Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = -2
Query:  248 ALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 586
            AL+    L L + + A V  AI+CG V GSLAPC  +L  GG   PP CC GV++LN  A+TTPDRQ AC C++   +SI G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:    4 ALRFFTCLVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-27
Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = -2
Query:  248 LMAALKLVCALRLCILVTAPVT--NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 595
            +   +KL C +  C++V  P+T   A+TCG V  ++APCI ++  GG  P   CC GV  LN  ARTTPDRQ AC CL+ A R++ P +NA  AAG+P+ CGVS+P+ IS NT+C+ V+
Sbjct:    1 MAGVMKLACLVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.403e-27
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  248 LKLVC--ALRLCILVTAP-VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINAN--VAAGLPRQCGVSIPYKISPNTDCSRVR 583
            LKLVC  A+  C+ V  P    A++CGQV  +L PCI ++  GG   P  CC GVRSL   A+TT DRQ+ CNCLKQA   IP  NAN  +AAGLP +CGV+IPYKISP+TDC  ++
Sbjct:    8 LKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.394e-27
Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = -2
Query:  248 KLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 580
            K+ C + LC++V AP   A+TCGQVT +LAPC+ +L   G  P   CC GV+ L G A+TT DRQAAC CLK A  S   ++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:    6 KIACFVLLCMVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.965e-27
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = -2
Query:  248 ALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 586
            AL+      L + + A V  AITCG V  SL+PC+ +L  GG   PPPCC GV+ LNG A+TTPDRQ AC CL+ A +   G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:    4 ALRFFTCFVLTVFIVASVDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.965e-27
Identity = 61/115 (53.04%), Postives = 77/115 (66.96%), Query Frame = -2
Query:  251 AALKLVCALRLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 589
            A L LV  +   +L+  P T   AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:    4 AQLVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.965e-27
Identity = 61/115 (53.04%), Postives = 77/115 (66.96%), Query Frame = -2
Query:  251 AALKLVCALRLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 589
            A L LV  +   +L+  P T   AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:    4 AQLVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-26
Identity = 59/114 (51.75%), Postives = 76/114 (66.67%), Query Frame = -2
Query:  248 LKLVCALRLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 583
            +KL C +  C++V  P+    A++CG V+G+LA CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:    5 VKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
The following BLAST results are available for this feature:
BLAST of CB305027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP2_SOLPN6.300e-2853.15Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP2_BRANA6.300e-2852.63Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP3_ARATH8.228e-2850.44Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTPA_BRAOT1.075e-2747.90Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP3_PRUDU1.403e-2754.70Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP2_SOLCI2.394e-2753.15Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP4_ARATH6.965e-2750.44Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP2_ORYSI6.965e-2753.04Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ6.965e-2753.04Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTPB_BRAOT1.188e-2651.75Non-specific lipid-transfer protein B OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_A08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_A08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305027 ID=CB305027; Name=CB305027; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAATACCACAAAATAACTAG
AATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGATATTA
AAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGA
CTCGTTCGGACAAAGAATTTAACATATATATTCTTTATTTATTTATTCTT
CTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCT
GACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTC
CACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGATT
GATCGGTAAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGT
GGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTG
GAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAG
CCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCACCAG
AATGCACAAACGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGAATTT
TTCAGGGAGGCTTTTGCTTGGTTATAGCTAGTTAT
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