CB305046

Overview
NameCB305046
Unique NameCB305046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_KLULA (40S ribosomal protein S1 OS=Kluyveromyces lactis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.575e-29
Identity = 68/126 (53.97%), Postives = 88/126 (69.84%), Query Frame = -1
Query:  272 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 646
            V VKT+D+Y LR+F I FT++  NQVKRT YAQ+S IRQIR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+    DE
Sbjct:  125 VTVKTSDDYVLRIFAIAFTRKQANQVKRTSYAQSSHIRQIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLLSLHGEASAEEKGKKVAGFKDE 250          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.687e-29
Identity = 62/110 (56.36%), Postives = 81/110 (73.64%), Query Frame = -1
Query:  317 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 646
            VDVKTTD + LR+FCIGFT +     ++TCYAQ SQI+ IR KM  I+  +  S DLKG+VEK + + I ++IEKA   +YPL +V+IRKVK+LK P+FDL  LME+HGD
Sbjct:  128 VDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 237          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_MONBE (40S ribosomal protein S3a OS=Monosiga brevicollis GN=34920 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 67/138 (48.55%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  245 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPADEPIPEAPTEV 649
            +VDVKT D Y LR+F IGFTK+  N  ++TCYAQ++Q R +R KM EIM  + A+CDLK  V K +   IG+EI+K   SI+PLQ+V+IRKVK+LK P+FD+ KL+E+HG+    + D G  + +  +   P+  T V
Sbjct:  123 FVDVKTNDGYVLRIFSIGFTKKQANSDRKTCYAQSAQKRALRAKMVEIM-QREATCDLKEFVSKLMPGTIGQEIQKKCQSIFPLQDVYIRKVKVLKKPRFDVSKLLELHGEAGGVTADKGKTVAKSGEFVEPKPQTSV 259          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_ANODA (40S ribosomal protein S3a OS=Anopheles darlingi PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.583e-29
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = -1
Query:  317 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 646
            VDVKTTD Y LR+FCIGFT +     ++TCYAQ SQI+ IR++M  I+  +  + DLKG+VEK + + I ++IEKA   +YPL +VFIRKVK+LK P+FDL  L+E+HGD
Sbjct:  128 VDVKTTDGYLLRVFCIGFTIKDSVSQRKTCYAQHSQIKNIRQRMTTIIKREIINSDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVFIRKVKVLKKPRFDLSSLLELHGD 237          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_VANPO (40S ribosomal protein S1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.986e-29
Identity = 68/126 (53.97%), Postives = 86/126 (68.25%), Query Frame = -1
Query:  272 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 646
            V VKT+D+Y LR+F I FT++  NQVKRT YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+    DE
Sbjct:  125 VTVKTSDDYVLRVFAIAFTRKQSNQVKRTSYAQSSHIRAIRKVISEILTREVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLMALHGEGSGEEKGKKVSGFKDE 250          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.986e-29
Identity = 67/142 (47.18%), Postives = 93/142 (65.49%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----------YSEDVGVKMERPA--DEPIPEA 646
            VDVKTTD Y LR+FCIGFT +     ++TCYAQ SQI++IRRKM  I+     S DLK +V K + + I ++IEK+   IYPL +V+IRKVK+LK P+FDL  L+E+HGD           + + GV ++RP   + P+ E+
Sbjct:  128 VDVKTTDGYLLRVFCIGFTIKDSVSQRKTCYAQHSQIKEIRRKMTTIITRDVTSSDLKEVVNKLLPDSIAKDIEKSCQGIYPLHDVYIRKVKVLKKPRFDLANLLELHGDGGGKGAEVSTGAAEGGVTIDRPEGYEPPVQES 269          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.817e-29
Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = -1
Query:  263 VKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV---KMERPADEPIP 640
            VKTTD YTLR+F I FTK+  NQVK+T Y + S+IR+IR +M   +  +   CDLK +V K I + IG++IEK    +YPLQ V+IRKVKI+K PK DLG+L ++HGD S  VG    K++RP D   P
Sbjct:  125 VKTTDGYTLRVFVIAFTKKSANQVKKTSYTKTSKIRKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKIDLGRLHDLHGD-SITVGADGEKVDRPDDYEPP 252          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.021e-28
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = -1
Query:  317 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 646
            VDVKTTDNY LR+FCIGFT +     ++TCYAQ SQI+ IR+ M +I+     S DLK +V K + + I ++IEKA   +YPL +V+IRKVK+LK P+FDL  L+E+HGD
Sbjct:  128 VDVKTTDNYLLRVFCIGFTIKDQVSQRKTCYAQHSQIKAIRKNMTQIITNNVTSSDLKEVVNKLLPDSIAKDIEKACQGVYPLHDVYIRKVKVLKKPRFDLANLLELHGD 237          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMA (40S ribosomal protein S3a OS=Bombyx mandarina PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.021e-28
Identity = 64/135 (47.41%), Postives = 92/135 (68.15%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPEA 646
            +DVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+      + G K ERP   + P+ E+
Sbjct:  128 IDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKREAGDKSERPEGYEPPVQES 262          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_SPOFR (40S ribosomal protein S3a OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.742e-28
Identity = 64/136 (47.06%), Postives = 92/136 (67.65%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----DVGVKMERPA--DEPIPEA 646
            +DVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+       + G K ERP   + P+ E+
Sbjct:  128 IDVKTTDGYLLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGSGKRGEAGDKSERPEGYEPPVQES 263          
The following BLAST results are available for this feature:
BLAST of CB305046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
RS3A_KLULA1.575e-2953.9740S ribosomal protein S1 OS=Kluyveromyces lactis G... [more]
RS3A_ANOGA2.687e-2956.3640S ribosomal protein S3a OS=Anopheles gambiae GN=... [more]
RS3A_MONBE3.509e-2948.5540S ribosomal protein S3a OS=Monosiga brevicollis ... [more]
RS3A_ANODA4.583e-2955.4540S ribosomal protein S3a OS=Anopheles darlingi PE... [more]
RS3A_VANPO5.986e-2953.9740S ribosomal protein S1 OS=Vanderwaltozyma polysp... [more]
RS3A_AEDAE5.986e-2947.1840S ribosomal protein S3a OS=Aedes aegypti GN=AAEL... [more]
RS3A_CAEBR7.817e-2951.9440S ribosomal protein S3a OS=Caenorhabditis briggs... [more]
RS3A_CULQU1.021e-2854.5540S ribosomal protein S3a OS=Culex quinquefasciatu... [more]
RS3A_BOMMA1.021e-2847.4140S ribosomal protein S3a OS=Bombyx mandarina PE=2... [more]
RS3A_SPOFR1.742e-2847.0640S ribosomal protein S3a OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305046 ID=CB305046; Name=CB305046; organism=Citrus sinensis; type=EST; length=649bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTAGAATAATGTATCTAA
TCCACTGGAATAAAGAATAAGGTAATCATGTTCATACCACAGAAACCGCT
GCAGCCATCTCAAATATCAGCTAGAATAAAATATGTAAACTCAAAACAAA
TTTGAGTTCATCACAAACAAAACTGCCCAAAAATTACTAGATCTGATTGG
TTATAAAGACAAACTACAAAAATTTTCTTTATTCAAGCTCCAATCACTTC
AGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTTCCATCTTTACAC
CAACATCCTCAGAGTAATCACCATGAACCTCCATCAACTTTCCAAGATCA
AACTTAGGAGCTTTCAAGATCTTCACTTTGCGGATGAAAACATTTTGTAA
GGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTCCAATTATTTCAG
CAATGAACTTTTCGACCAAGCCCTTAAGATCACACGATGCTGCCTGAGCA
ATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGCCTG
TGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCTTGGTGAATCCAA
TGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTGACATCCACGTA
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