CB305046

Overview
NameCB305046
Unique NameCB305046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_DROPS (40S ribosomal protein S3a OS=Drosophila pseudoobscura pseudoobscura GN=RpS3A PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.925e-27
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = -1
Query:  317 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 646
            V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  128 VEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_DROPE (40S ribosomal protein S3a OS=Drosophila persimilis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.925e-27
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = -1
Query:  317 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 646
            V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  128 VEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_DROME (40S ribosomal protein S3a OS=Drosophila melanogaster GN=RpS3A PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.925e-27
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = -1
Query:  317 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 646
            V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  128 VEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_DROER (40S ribosomal protein S3a OS=Drosophila erecta GN=RpS3A PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.925e-27
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = -1
Query:  317 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 646
            V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  128 VEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_DROSE (40S ribosomal protein S3a OS=Drosophila sechellia GN=RpS3A PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.515e-27
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = -1
Query:  317 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 646
            V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  128 VEAKTIDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_DROMO (40S ribosomal protein S3a OS=Drosophila mojavensis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.515e-27
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = -1
Query:  317 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 646
            V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  128 VEAKTVDGYLLRVFCIGFTFKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDISKLLELHGD 237          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_DROAN (40S ribosomal protein S3a OS=Drosophila ananassae GN=RpS3A PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.515e-27
Identity = 64/140 (45.71%), Postives = 91/140 (65.00%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDV-----GVKMERPA--DEPIPEA 646
            V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD    S D      G  ++RP   + P+ EA
Sbjct:  128 VEAKTIDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSSDAVVSTEGAVIDRPEGYEPPVQEA 267          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAST (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae GN=RPS1A PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.515e-27
Identity = 64/126 (50.79%), Postives = 85/126 (67.46%), Query Frame = -1
Query:  272 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 646
            V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:  125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS7 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.515e-27
Identity = 64/126 (50.79%), Postives = 85/126 (67.46%), Query Frame = -1
Query:  272 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 646
            V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:  125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS6 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.515e-27
Identity = 64/126 (50.79%), Postives = 85/126 (67.46%), Query Frame = -1
Query:  272 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 646
            V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:  125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          
The following BLAST results are available for this feature:
BLAST of CB305046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
RS3A_DROPS1.925e-2750.9140S ribosomal protein S3a OS=Drosophila pseudoobsc... [more]
RS3A_DROPE1.925e-2750.9140S ribosomal protein S3a OS=Drosophila persimilis... [more]
RS3A_DROME1.925e-2750.9140S ribosomal protein S3a OS=Drosophila melanogast... [more]
RS3A_DROER1.925e-2750.9140S ribosomal protein S3a OS=Drosophila erecta GN=... [more]
RS3A_DROSE2.515e-2750.9140S ribosomal protein S3a OS=Drosophila sechellia ... [more]
RS3A_DROMO2.515e-2750.9140S ribosomal protein S3a OS=Drosophila mojavensis... [more]
RS3A_DROAN2.515e-2745.7140S ribosomal protein S3a OS=Drosophila ananassae ... [more]
RS3A1_YEAST2.515e-2750.7940S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS72.515e-2750.7940S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS62.515e-2750.7940S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305046 ID=CB305046; Name=CB305046; organism=Citrus sinensis; type=EST; length=649bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTAGAATAATGTATCTAA
TCCACTGGAATAAAGAATAAGGTAATCATGTTCATACCACAGAAACCGCT
GCAGCCATCTCAAATATCAGCTAGAATAAAATATGTAAACTCAAAACAAA
TTTGAGTTCATCACAAACAAAACTGCCCAAAAATTACTAGATCTGATTGG
TTATAAAGACAAACTACAAAAATTTTCTTTATTCAAGCTCCAATCACTTC
AGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTTCCATCTTTACAC
CAACATCCTCAGAGTAATCACCATGAACCTCCATCAACTTTCCAAGATCA
AACTTAGGAGCTTTCAAGATCTTCACTTTGCGGATGAAAACATTTTGTAA
GGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTCCAATTATTTCAG
CAATGAACTTTTCGACCAAGCCCTTAAGATCACACGATGCTGCCTGAGCA
ATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGCCTG
TGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCTTGGTGAATCCAA
TGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTGACATCCACGTA
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