CB305052

Overview
NameCB305052
Unique NameCB305052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.070e-35
Identity = 70/98 (71.43%), Postives = 85/98 (86.73%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA +K+ LI   +G +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.070e-35
Identity = 70/98 (71.43%), Postives = 85/98 (86.73%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA +K+ LI   +G +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.070e-35
Identity = 70/98 (71.43%), Postives = 85/98 (86.73%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA +K+ LI   +G +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 5.308e-35
Identity = 69/98 (70.41%), Postives = 82/98 (83.67%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ LI   +G     E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ SG+VDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEEEL
Sbjct:    1 MATYKVTLINDAEGLNQTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.183e-34
Identity = 66/97 (68.04%), Postives = 82/97 (84.54%), Query Frame = -1
Query:  184 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ LI  +G     +  +D YILDAAEEAG+DLPYSCRAGACSTCAGKLV+G++DQSD SFLDD+Q+EAGY+LTC++YPTSD  I++HKEE+L
Sbjct:    1 MATYKVTLIDAEGTTTTIDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 64/96 (66.67%), Postives = 82/96 (85.42%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P G+  EFE  +D YILD AEE G+DLPYSCRAG+CS+CAGK+ +G+VDQSDGSFLDD+Q+  G++LTC++YPTSD VI++HKEEEL
Sbjct:    1 ATYKVKLVTPSGQPLEFECPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEEEL 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 71/124 (57.26%), Postives = 95/124 (76.61%), Query Frame = -1
Query:  184 PTSLGSVKGISKTFGLKCSPNFQ--ASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 549
            PT++G        FGLK S +     +MA YK+ L+ P+G++ E E  +D YILDAAEEAG+DLPYSCRAG+CS+CAGK+ SGSV+Q DGSFLDD+Q++ G++LTC++YPT D  I++HKEEEL
Sbjct:   29 PTNVGRA-----LFGLKSSASRGRVTAMAAYKVTLVTPEGKQ-ELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.441e-34
Identity = 67/98 (68.37%), Postives = 81/98 (82.65%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ LI   +G     +  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ SGS+DQSD SFLDD+Q+EAGY+LTC++YPTSDC IQ+H+EE L
Sbjct:    1 MATYKVTLISEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.665e-34
Identity = 64/96 (66.67%), Postives = 82/96 (85.42%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P+G++ EF+  +D YILD AEE G+DLPYSCRAG+CS+CAGK+  G VDQSDGSFLDD QME G++LTC+++PTSD VI++HKEEEL
Sbjct:    1 ATYKVKLVTPQGQQ-EFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.001e-33
Identity = 67/98 (68.37%), Postives = 82/98 (83.67%), Query Frame = -1
Query:  184 SMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 477
            + A YK+KL+ P+GE  E E  +D YILD AEE G+DLPYSCRAG+CS+CAGKLVSG +DQSD SFLDD+QMEAG++LTC +YP SD VI++HKEEEL
Sbjct:   45 AQATYKVKLVTPEGEV-ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEEL 141          
The following BLAST results are available for this feature:
BLAST of CB305052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_NOSMU1.070e-3571.43Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANASP1.070e-3571.43Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO1.070e-3571.43Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER_CHLFR5.308e-3570.41Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER1_APHFL1.183e-3468.04Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FERB_ALOMA2.634e-3466.67Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER1_MESCR2.634e-3457.26Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_SPIMA3.441e-3468.37Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FERA_ALOMA7.665e-3466.67Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_WHEAT1.001e-3368.37Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305052 ID=CB305052; Name=CB305052; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGAAAAATTACAGATTCC
ATTGCACCAGACAACACGCTGAAATCTAAAAAATATTGTAGGCCCATGAG
AAACCTTATCAGCATACTCAGGCACTTGATCACAGTTCATACTTGAAAAA
CCCTAAACCAACTGACAGCAAAGGCACTCAGCAAAGCTCTTCTTCCTTGT
GAGACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGA
TAACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTC
AACTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGC
GGCAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATG
TACTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCCTTAGGTCCAAT
CAGCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATT
TCAGGCCAAAGGTCTTGGAGATGCCCTTAACAGATCCAAGTGAGGTTGGG
CTCTT
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