CB305052

Overview
NameCB305052
Unique NameCB305052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 5.493e-32
Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = -1
Query:  184 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ L+ P GE    +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +H+EEEL
Sbjct:    1 MATYKVTLVRPDGET-TIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEEL 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.174e-32
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = -1
Query:  184 MAVYKIKLIGPK-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ LI  + G     E  +D+YILD AEE G+DLPYSCRAGACSTCAGK+  G +DQSD SFLDD+Q+EAGY+LTC++YP SDC I +H+EEEL
Sbjct:    1 MASYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.174e-32
Identity = 65/97 (67.01%), Postives = 82/97 (84.54%), Query Frame = -1
Query:  184 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ LI P GE   ++A +D+YILD+A +AG DLP SCRAGACSTCAGK+VSG+VDQS+ SFLDD+Q+EAGY+LTCI+YP SD  I+++KEEEL
Sbjct:    1 MATYKVTLITPDGEV-SYDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.174e-32
Identity = 64/98 (65.31%), Postives = 78/98 (79.59%), Query Frame = -1
Query:  184 MAVYKIKLIGPK-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            M  YK+KL   K G + E     DQYILDAAEE G+DLPYSCRAGACSTCAGKL+SG+VDQSD SFLDD Q++ G++LTC++YPTS+C I +H+EE L
Sbjct:    1 MTSYKVKLTNEKEGIDVEINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.370e-32
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P G   EFE  +D+YILD AEE G DLPYSCRAG+CS+CAGK+ +GSVDQSDG+FLDD+Q+  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFECPDDEYILDRAEEEGHDLPYSCRAGSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.370e-32
Identity = 68/123 (55.28%), Postives = 92/123 (74.80%), Query Frame = -1
Query:  184 TSLGSVKGISKT-FGLKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 546
            TSL  +  + +  FGLK +   + + MA YK+KLI P G   EF+  ++ YILD AEEAG DLPYSCRAG+CS+CAGK+  G+VDQ+DG+FLDD+Q+E G++LTC++YP SD  I++HKE EL
Sbjct:   21 TSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPI-EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 142          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 9.370e-32
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ L+   +G     +  +D YILDAAEE G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+ AG++LTC++YPTSD  I++HKEE+L
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 9.370e-32
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ L+   +G     +  +D YILDAAEE G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+ AG++LTC++YPTSD  I++HKEE+L
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.224e-31
Identity = 62/98 (63.27%), Postives = 80/98 (81.63%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            M  +K+ LI   +G     E  +D+YILDAAEE G+DLPYSCRAGACSTCAGK+ +G+VDQSD SFLDD+Q++AGY+LTC++YPTSDC I +H+EE+L
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.598e-31
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P G++ EF+  +D YILD AEE G+DLPYSCRAG+CS+CAGK+  G VDQSDGSFLDD Q+  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPSGQQ-EFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CB305052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SYNLI5.493e-3264.95Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER_SYNP47.174e-3264.29Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER1_SYNP27.174e-3267.01Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER1_CYACA7.174e-3265.31Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_SOLAB9.370e-3264.58Ferredoxin OS=Solanum abutiloides PE=1 SV=1[more]
FER_CAPAN9.370e-3255.28Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER1_SYNP69.370e-3264.29Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE79.370e-3264.29Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER1_PLEBO1.224e-3163.27Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER_COLES1.598e-3163.54Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305052 ID=CB305052; Name=CB305052; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGAAAAATTACAGATTCC
ATTGCACCAGACAACACGCTGAAATCTAAAAAATATTGTAGGCCCATGAG
AAACCTTATCAGCATACTCAGGCACTTGATCACAGTTCATACTTGAAAAA
CCCTAAACCAACTGACAGCAAAGGCACTCAGCAAAGCTCTTCTTCCTTGT
GAGACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGA
TAACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTC
AACTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGC
GGCAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATG
TACTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCCTTAGGTCCAAT
CAGCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATT
TCAGGCCAAAGGTCTTGGAGATGCCCTTAACAGATCCAAGTGAGGTTGGG
CTCTT
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