CB305052

Overview
NameCB305052
Unique NameCB305052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2549 contig Csv1_Contig2549:594..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.087e-31
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = -1
Query:  184 SMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 477
            + A Y +KLI P+GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSGSVDQSD S+LDD Q+  G++LTC +YPTSD VI++HKEEEL
Sbjct:   51 AQATYNVKLITPEGEV-ELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEEL 147          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.726e-31
Identity = 62/94 (65.96%), Postives = 79/94 (84.04%), Query Frame = -1
Query:  184 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 465
            YK+KL+ P+GE+ EFE  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSG VD SD SFL+D+ M+AGY+LTC +Y  SD VI++HKEEE+
Sbjct:    4 YKVKLLTPEGEK-EFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.561e-31
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YKI L+   +G +  F+  ED YILDAAEEAG++LPYSCRAGACSTCAGK+  GSVDQSD SFLDD Q+  GY+LTCI+YP SDC I +H E+EL
Sbjct:    1 MADYKIHLLSEDEGIDVTFDCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQEL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.561e-31
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = -1
Query:  184 PNFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 492
            P  + S   YK+ L  P G++   E   D YILDAAEEAG+DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD QM  G++LTC++YPTSDC IQ+H+EE L
Sbjct:   24 PASRMSCMAYKVTLKTPSGDK-TIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.561e-31
Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = -1
Query:  184 FGLKC-SPNFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 510
            FGLK  S   + +MA YK+ L+ P G   EF+  +D YILDAAEE G+DLPYSCRAG+CS+CAGKL +GS++Q D SFLDD+Q++ G++LTC +YP SD  I++HKEEEL
Sbjct:   37 FGLKTGSRGGRMTMAAYKVTLVTPTGNV-EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.650e-31
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KLI P+G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ASYKVKLITPEGAV-EFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.073e-31
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A Y +KLI P GE    E  EDQYILDAAE+AG+DLPYSCRAGACS+C G +  G+VDQSD SFLDD+QM  G+ LTC +YPTS+C I++HKE++L
Sbjct:    1 ATYSVKLINPDGEV-TIECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 6.073e-31
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = -1
Query:  184 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ L  P G+ +     +D+YILD AEE G+DLPYSCRAGACSTCAGKLVSG     D SFLDD+Q++AGY+LTC++YPT DCVI++HKEE L
Sbjct:    1 MASYKVTLKTPDGD-NVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CB305052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_MAIZE2.087e-3165.31Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER_PANGI2.726e-3165.96Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER_PORPU3.561e-3166.33Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER_CHLRE3.561e-3162.14Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER1_SPIOL3.561e-3159.09Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER_TOBAC4.650e-3164.58Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FER_EUGVI6.073e-3164.58Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_APHSA6.073e-3163.92Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_DATME1.036e-3062.50Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN1.036e-3062.50Ferredoxin OS=Datura inoxia PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305052 ID=CB305052; Name=CB305052; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGAAAAATTACAGATTCC
ATTGCACCAGACAACACGCTGAAATCTAAAAAATATTGTAGGCCCATGAG
AAACCTTATCAGCATACTCAGGCACTTGATCACAGTTCATACTTGAAAAA
CCCTAAACCAACTGACAGCAAAGGCACTCAGCAAAGCTCTTCTTCCTTGT
GAGACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGA
TAACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTC
AACTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGC
GGCAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATG
TACTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCCTTAGGTCCAAT
CAGCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATT
TCAGGCCAAAGGTCTTGGAGATGCCCTTAACAGATCCAAGTGAGGTTGGG
CTCTT
back to top