CB305055

Overview
NameCB305055
Unique NameCB305055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305055_ssr332 microsatellite CB305055_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10133 contig Csv1_Contig10133:113..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            D +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   24 DRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            + +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   24 ERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            + +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   24 ERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            + +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   24 ERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            + +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   24 ERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            + +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   24 ERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   24 DRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_DICDI (40S ribosomal protein S27a OS=Dictyostelium discoideum GN=ubqC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = -3
Query:  176 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYV 325
            LAVL++YK D++GK++R+ +ECP   CGAG FMA H +R YCGKC  T V
Sbjct:   25 LAVLKYYKFDENGKIKRVLRECPAETCGAGVFMAQHANRQYCGKCHSTLV 74          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = -3
Query:  395 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 547
            +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:   26 IKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CB305055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RUB2_ARATH3.652e-1262.26NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_RAT8.137e-1258.49NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT8.137e-1258.49NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE8.137e-1258.49NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN8.137e-1258.49NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN8.137e-1258.49NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RUB3_ORYSJ1.388e-1158.49NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RS27A_DICDI1.388e-1158.0040S ribosomal protein S27a OS=Dictyostelium discoi... [more]
NEDD8_DICDI8.996e-1156.86NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305055 ID=CB305055; Name=CB305055; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACGCTCAAGCAAACAAGT
ATATAGTCAAACAAAATTACGAAAGAGTCATAATTTTTGAACCACAAAAA
CCATAGTAATTAATACTAATTAAAAATAGCAAAACAACCACCTAATCTCG
ATCAATCACCGCCAGCCTTCTGGTAAACATAGGTGAGTCCACACTTGCCG
CAGTAGTGCCTGTCAAAGTGGTTAGCCATGAAGGGGCCGGCTCCACACTC
AGCATTCGGACACTCCTTCCTCAGCCTCTGGACCTTTCCAGAATCATCGA
CCTTGTAAAACTGCAAGACGGCGAGCTTGACCTTCTTCTTCTTGTGCTTG
ATCTTTTTCGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTCGCGCCACC
ACGGAGACGGAGGACGAGGTGGAGTGTTGACTCCTTTTGGATGTTGTAGT
CGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGC
TGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATT
GTCGA
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