CB305057

Overview
NameCB305057
Unique NameCB305057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9028 contig Csv1_Contig9028:208..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_ASHGO (Dynein light chain 1, cytoplasmic OS=Ashbya gossypii GN=DYN2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.696e-20
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = -1
Query:  222 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKS 476
            K  I+K++D+ ++L+ E   I++ A E+  +E++VA  IKK+ D KHG TWH IVG NFGSYVTHE  HF+YFY+   A L+FK+
Sbjct:    3 KPAILKASDITDELRDEIFGISVQAVEQFQLEREVAAYIKKELDSKHGQTWHVIVGKNFGSYVTHEKGHFIYFYIGPLAFLVFKT 87          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_YEAST (Dynein light chain 1, cytoplasmic OS=Saccharomyces cerevisiae GN=DYN2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.028e-18
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = -1
Query:  222 IIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKS 467
            I+K++D+ + L+++ + I+  A +K  +E+D+A  +KK  D K+G TWH IVG NFGSYVTHE  HFVYFY+   A L+FK+
Sbjct:   10 IVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKT 91          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_DEBHA (Dynein light chain 1, cytoplasmic OS=Debaryomyces hansenii GN=DYN2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.028e-18
Identity = 40/91 (43.96%), Postives = 61/91 (67.03%), Query Frame = -1
Query:  219 VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 491
            +S+  +  I+K++D+ E++Q    +++  A     +EKD+A  +KK+ D+ +G TWH IVG +FGSYVTHE   F YFY+ Q A L+FKSG
Sbjct:    1 MSEKEQEPILKASDLPEEMQTRIFELSNEAVSNYKIEKDIATYLKKELDQLYGATWHVIVGKSFGSYVTHEQGFFTYFYIGQLAFLIFKSG 91          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_CANGA (Dynein light chain 1, cytoplasmic OS=Candida glabrata GN=DYN2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.649e-18
Identity = 39/84 (46.43%), Postives = 63/84 (75.00%), Query Frame = -1
Query:  222 RIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKS 473
            ++I+K++DM +++Q+E   IA  A  ++++E+++A  IKK+ D ++G TWH IVG +FGSYVTHE   FVYFY+   A+L+FK+
Sbjct:    3 QVIVKASDMGDEMQQEVFRIAEEAMREHTLEREIASVIKKEMDSRYGHTWHVIVGRSFGSYVTHEKGKFVYFYVGPLALLVFKT 86          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_KLULA (Dynein light chain 1, cytoplasmic OS=Kluyveromyces lactis GN=DYN2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.421e-16
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  222 IIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKS 467
            ++K++D+ ++L+ E  +++  A     +E+++A  IKK  D   G TWH IVG NFGSYVTHE  +FVYFY+   A L+FK+
Sbjct:    5 VLKASDITDELRDEIFELSSNATANYKLEREIAAYIKKQLDVSQGETWHVIVGKNFGSYVTHEKGYFVYFYIGPLAFLVFKT 86          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL2_CAEEL (Probable dynein light chain 2, cytoplasmic OS=Caenorhabditis elegans GN=dlc-2 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 30/88 (34.09%), Postives = 52/88 (59.09%), Query Frame = -1
Query:  219 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 482
            S ++I +K  DM++  +   + +   A    +++KDVA  +K++ DKK G TWH I G  FGS V++E  HF+    ++  V+++K G
Sbjct:    2 SEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89          
The following BLAST results are available for this feature:
BLAST of CB305057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DYL1_ASHGO3.696e-2050.59Dynein light chain 1, cytoplasmic OS=Ashbya gossyp... [more]
DYL1_YEAST2.028e-1848.78Dynein light chain 1, cytoplasmic OS=Saccharomyces... [more]
DYL1_DEBHA2.028e-1843.96Dynein light chain 1, cytoplasmic OS=Debaryomyces ... [more]
DYL1_CANGA2.649e-1846.43Dynein light chain 1, cytoplasmic OS=Candida glabr... [more]
DYL1_KLULA9.421e-1643.90Dynein light chain 1, cytoplasmic OS=Kluyveromyces... [more]
DYL2_CAEEL9.125e-1134.09Probable dynein light chain 2, cytoplasmic OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305057 ID=CB305057; Name=CB305057; organism=Citrus sinensis; type=EST; length=497bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTAAAAACTGCAGTGCACA
TCCATTTTGAAGTATCAAACCAGTTCCAAGCGAATTCAAATATACAACTT
AGGCTCAAGAATCTCCATGTAAAGATTTCAATTACTACATACAGACAATA
TTTATAGCATTTGGAACGTAAACTCATCATCCGAACCACAATCCACCATC
TTTCTCGACATTAGGCTAACCGGATTTGAATAACAAAACTGCTTTCTGAT
CCAAATAGAAATAAACAAAGTGGTTTGTTTCGTGAGTCACATATGAACCA
AAATTGCTACCGACAATACAGTGCCAAGTAGGTCCATGCTTCTTATCAAA
ATCCTTCTTTATCCTCTCAGCTACATCTTTCTCTACACTGTTCTTCTCAA
ATGCTGCAATAGCAATATCAACAGCCTCCTTTTGCAGGTCCTCTTTCATG
TCGGCGCTCTTAATAATGATTCGTTTTCCAGATTGGGACACTGCCAC
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