CB305063

Overview
NameCB305063
Unique NameCB305063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.022e-18
Identity = 61/182 (33.52%), Postives = 77/182 (42.31%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHC---TSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFFA  + ET+              +C + E N    +C   T   YPC     YYGRGP+QL  N NY E G  +G + L+ PE VA D V+SF+ ALWFWM          H V+                 GF      I    EC    + +  +R+  Y  YC    VDPG  L C
Sbjct:  119 AAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVAD--YYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYC 298          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.700e-17
Identity = 58/176 (32.95%), Postives = 78/176 (44.32%), Query Frame = -3
Query:  160 AAFFAHVTHETTD---------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGF--DGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFF   +HET           +C++++  ++D               YYGRGPIQLT   NY  AG+ IG   + +N+P+ VA D +ISFKTA+WFWMT        H+V+                 G+      ING  ECG         R+  Y  YC    V  G  L+C
Sbjct:   83 AAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDR--------------YYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDC 244          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 7.444e-17
Identity = 48/106 (45.28%), Postives = 61/106 (57.55%), Query Frame = -3
Query:  325 AAFFAHVTHETTDFCYIEEKNKADPH-----------------CTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT 591
            AAF AH++  T+     E  +  +PH                 CTS  +PCA GK Y  RGPIQLT N NY  AG+AIG D + +P+ V +D +ISFKTALWFWM+
Sbjct:  184 AAFLAHISQATSG----ERSDVENPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMS 285          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 58/176 (32.95%), Postives = 78/176 (44.32%), Query Frame = -3
Query:  160 AAFFAHVTHETTD---------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGF--DGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFF   +HET           +C++ + +++D               YYGRGPIQLT   NY  AG+ IG   D +N+P+ VA D +ISF+TA+WFWMT        H+V+                 G+      ING  EC       V  R+  Y  YC    V  G  L+C
Sbjct:   83 AAFFGQTSHETKGGSAGTFTGGYCFVRQIDQSDR--------------YYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDC 244          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.231e-16
Identity = 53/150 (35.33%), Postives = 66/150 (44.00%), Query Frame = -3
Query:  205 AAFFAHVTHETTDFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTD 591
            AAF A  +HETT            P      Y   +   Y+GRGPIQ++ N NY  AG+AIG D L +P+ V  D  + FKTALWFWMT        H V+                 G+      I+G  ECG      V DR+  Y D
Sbjct:   49 AAFLAQTSHETTG---------GWPTAPDGPYELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD 189          
The following BLAST results are available for this feature:
BLAST of CB305063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI8_POPTR3.022e-1833.52Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIA_SOLLC5.700e-1732.95Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
AGI_URTDI7.444e-1745.28Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIA_SOLCI9.722e-1732.95Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIT_AVESA8.231e-1635.33Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305063 ID=CB305063; Name=CB305063; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATCAGGTACAAGAAAAT
TATTCCGTCAGAGTTACCAAACAGAGAAAGTTGTTTGAAATAACTCTGGC
TTATTGTGATACAATATAATACATATACTGTAATATTTTTTGTACAAAAT
ATCTATTCAGCATTCAAGACGTGATCCAGGATCAACACCAAATCTTTTGC
AATAATCAGTGTAACGCCTAACACGATCCAGAACTTGGTCGCGGTTTCGG
CCACCGCATTCAGCAGGACCATTAATTTTCCGAATTGTTTCACTAAAACC
TTGGTTTAGTACTGAGTGCACATATGTCATCCAAAACCACAAAGCAGTCT
TGAAAGATATGACACGGTCCCTGGCTACTGTTTCCGGAGAGTTCAGACCG
TCGAAACCGATGGCCCTTCCCGCCTCTATGTAGTTTCCATTTCCGGTGAG
CTGAATCGGTCCCCGGCCGTAGTAGAATTTACCATTGGCACATGGGTATT
GTGGAGATGTACAATGAGGATCTGCTTTATTCTTCTCTTCTATGTAGCAA
AAATCTGTTGTTTCATGAGTGACATGGGCAAAAAATGCCGCAA
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