CB305064

Overview
NameCB305064
Unique NameCB305064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6139 contig Csv1_Contig6139:725..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.140e-24
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  198 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLV-----DDENPPKYKAKKFKDYSYCKLNK 590
            K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD  WI+   +  ++V++IGDQ+E+++NGKYK+VLHR     D  RMS   F  P +D V+ P P LV     ++E    Y    F+DY    + K
Sbjct:  162 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDREWIEVPPLRYSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEKEAEEEEKKEIYPKFVFQDYMNLYIRK 298          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.223e-24
Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLV-DDENPPKYKAKKFKDY 590
            K++ YPPCP+P+L  G+ AHTD   + +L  ++ V GLQ+ KDD+WID   + +++VI++GDQ+E+++NGKYK+V+HR     D  RMS   F  P  D V+ P   L+ ++E    Y    F DY
Sbjct:  158 KVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVMHRVIAQTDGARMSIASFYNPGDDAVISPASTLLKENETSEVYPKFVFDDY 283          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.055e-23
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKT-RMSWPVFLEPPADTVVGPLPQLV----DDENPPKYKAKKFKDY 590
            K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD  WID   + +A+V+++GDQ+E+++NG+YK+V+HR       T RMS   F  P +D V+ P P LV    D+E    Y    F+DY
Sbjct:  158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGNWIDVPPMRHAIVVNLGDQLEVITNGRYKSVMHRVLTQTSGTGRMSIASFYNPGSDAVIYPAPALVEKDQDEEKKEVYPKFVFEDY 287          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.505e-23
Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = -3
Query:  219 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKD--DRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 593
            + +N+YP CP P  ALG++AHTD    T ++ + VPGLQ+F+   DRW+    +P A+V+++GD  +IL+NG++ +V HR  V++D  R+S   FL PPA   V PL + +    P  Y+A  + +Y
Sbjct:  209 MHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALAG-TPAAYRAVTWPEY 334          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.505e-23
Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = -3
Query:  219 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKD--DRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 593
            + +N+YP CP P  ALG++AHTD    T ++ + VPGLQ+F+   DRW+    +P A+V+++GD  +IL+NG++ +V HR  V++D  R+S   FL PPA   V PL + +    P  Y+A  + +Y
Sbjct:  209 MHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALAG-TPAAYRAVTWPEY 334          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 5.978e-23
Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = -3
Query:  219 EAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 626
            + +GG+ I   L IN+YP CP PD ALG   H D + +T+L+P  V GL+V     WI     PNA V++ G Q+E+++NG  K++ HR   +    R S   F+ P  + ++GP  + +  ENPP Y+   F+D+
Sbjct:  181 DLSGGNVI---LNINHYPSCPNPDKALGQPPHCDRNLITLLLPGAVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKENPPCYRTTMFRDF 313          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.020e-22
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = -3
Query:  219 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKD--DRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 593
            + +N+YP CP P  ALG++AHTD    T ++ + VPGLQ+F+   DRW+    +P A+V+++GD  +IL+NG++ +V HR  V+++  R+S   FL PPA   V PL + +    P  Y+A  + +Y
Sbjct:  209 MHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESDRISLGYFLGPPAHVKVAPLREALAG-TPAAYRAVTWPEY 334          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.020e-22
Identity = 52/130 (40.00%), Postives = 81/130 (62.31%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKD-KTRMSWPVFLEPPADTVVGPLPQLV----DDENPPKYKAKKFKDY 590
            K++ YPPCP PDL  G+ AHTD   + +L  ++ V GLQ+ KD  W+D   + +++V+++GDQ+E+++NGKYK+V HR     D + RMS   F  P +D+V+ P P+L+    + E    Y    F+DY
Sbjct:  158 KVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVLSQTDGEGRMSIASFYNPGSDSVIFPAPELIGKEAEKEKKENYPRFVFEDY 287          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.332e-22
Identity = 54/149 (36.24%), Postives = 89/149 (59.73%), Query Frame = -3
Query:  165 DDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ*IFHYEKN 611
            +D + + ++NYYP C +P+LALG   H D ++LT+L  ++V GLQVF D++W      P+A V++IGD    L+NG+YK+ LHR  V+ ++ R ++  FL P  + VV P  +LV   N  K   +K+ D+++    +  Q  +  + N
Sbjct:  220 EDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQDQVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKPPEELV---NGVKSGERKYPDFTWSMFLEFTQKHYRADMN 365          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.332e-22
Identity = 54/145 (37.24%), Postives = 84/145 (57.93%), Query Frame = -3
Query:  207 KEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQV----FKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCK 629
            K  +G D I+  L++N YP CP P LA+G+  HTD S LT+L    +PGL++     +  RWI  + I  +LV+ +GD   I+SNG++++ +HR  V+K   R+S   F  PP +  +GPL    D  +PP Y+   +++Y   K
Sbjct:  194 KTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKTHHRVSAAYFAGPPKNLQIGPLTS--DKNHPPIYRRLIWEEYLAAK 336          
The following BLAST results are available for this feature:
BLAST of CB305064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ACCO2_DORSP4.140e-2440.881-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO_PEA9.223e-2442.061-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
ACCO1_CUCME2.055e-2342.311-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
G3O22_WHEAT3.505e-2340.16Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT3.505e-2340.16Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
IDS3_HORVU5.978e-2337.502'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
G3O23_WHEAT1.020e-2239.37Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
ACCO1_ARATH1.020e-2240.001-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
GAOX3_ARATH1.332e-2236.24Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
G3OX3_ARATH1.332e-2237.24Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305064 ID=CB305064; Name=CB305064; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAATAAAGGATTATT
TATTATTGCTAATACCCGCGATTACATTTCAGAAACAAGATCGCAACAAC
AAACAAGAATCGATAAACGTACAGTGACGAGATAAAACATGAGCGGCCAG
CGGATACTGGTGTTATTTTTCTCATAATGAAAAATCTACTGAGGAAGTTT
GTTAAGTTTACAGTAACTGTAATCCTTGAACTTCTTGGCCTTGTACTTTG
GAGGATTTTCATCGTCAACCAGCTGAGGAAGGGGACCCACCACCGTATCC
GCAGGTGGCTCCAAGAAAACTGGCCACGACATTCTCGTCTTGTCCTTGCT
AACAGTGGTTCTATGCAGCACAGCTTTGTACTTGCCATTGCTCAGAATCT
CGATCTGGTCCCCGATGTGGATGACGAGAGCGTTGGGGATGTACTTGGCA
TCGATCCAACGGTCGTCCTTAAAGACTTGCAGACCAGGAACTTCATTGGG
AACAAGAACGGTGAGGGCAGAAAGATCAGTGTGGGCCACCACTCCAAGAG
CAAGATCAGGACGTGGGCATGGCGGATAATAATTAATCTTGAGCATGTAC
TCAATGTCGTCTCCTCCCGCTGCTTCTTTCA
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