CB305068

Overview
NameCB305068
Unique NameCB305068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:876..1522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = -2
Query:  317 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 583
            E++L+  + +V P+ VA +  D    Y+ G+     C N     NHAV+ VGYGVE+ VPYW++KN+WGE+WG+ GYF+++   N CGI
Sbjct:  230 EEKLKDLLRIVGPIPVAIDASDIVN-YRRGIMRY--CSN--YGFNHAVLLVGYGVENNVPYWILKNTWGEDWGEQGYFRVQQNINACGI 313          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATC_HUMAN (Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  305 PVSVAFEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 547
            P++VAFEV D F  YK G+Y  T   +   P ++ NHAV+ VGYG +   G+ YW++KNSWG  WG++GYF++  G + C I + A
Sbjct:  369 PMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIA 454          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = -2
Query:  293 SSENVGVQVLDS-VNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 640
            S EN     +D   N+    E+ L  AV   +PVSVA +     F+FY  GV++ + CG    +++H V  VGYG   DG  YW +KNSWG  WG+ GY +ME G    + +CGIA  ASYP+
Sbjct:  225 SKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS-CGT---ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 342          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 47/104 (45.19%), Postives = 59/104 (56.73%), Query Frame = -2
Query:  290 EDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV----EDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 583
            ED L +AV  + P+SVA +     F FYK G+Y    C +    V H+++ VGYG      DG  YWL+KNS G  WG+ GY K+   K N CGIAT A YP V
Sbjct:  232 EDALMNAVASIGPISVAIDARHASFLFYKRGIYYEPNCSSCV--VTHSMLLVGYGFTGRESDGRKYWLVKNSMGTQWGNKGYMKISRDKGNHCGIATYALYPRV 333          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATC_BOVIN (Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  305 PVSVAFEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVE--DGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 547
            P++VAFEV D F  Y+ GVY  T   +   P ++ NHAV+ VGYG +   G+ YW++KNSWG +WG++GYF++  G + C I + A
Sbjct:  369 PMAVAFEVYDDFLHYRKGVYHHTGLRDPFNPFELTNHAVLLVGYGTDAASGLDYWIVKNSWGTSWGENGYFRIRRGTDECAIESIA 454          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATC_PONAB (Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  305 PVSVAFEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 547
            P++VAFEV D F  YK G+Y  T   +   P ++ NHAV+ VGYG +   G+ YW++KNSWG  WG+ GYF++  G + C I + A
Sbjct:  369 PMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGEDGYFRIRRGTDECAIESIA 454          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATC_CANFA (Dipeptidyl-peptidase 1 (Fragment) OS=Canis familiaris GN=CTSC PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = -2
Query:  305 GAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 589
            GA +E    + LVR  P++VAFEV D F  Y+ G+Y  T   +   P ++ NHAV+ VGYG +   G+ YW++KNSWG  WG+ GYF++  G + C I + A
Sbjct:  325 GACNEALMKLELVRHGPMAVAFEVYDDFFHYQKGIYYHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGSRWGEDGYFRIRRGTDECAIESIA 426          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = -2
Query:  287 VQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED------GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 622
            VQV   V++  G E  +Q  +    P+S+     +  +FY+ GV    K   +  +++H V+ VGYGV D       +PYW++KNSWG  WG+ GY+++  G N CG++  A+  V+A
Sbjct:  498 VQVAGFVDLPKGNETAMQEWLLANGPISIGINA-NAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMATSAVLA 614          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = -2
Query:  296 EDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKN----MCGIATCASYP 583
            E  L+ AV   +PVSVA E     F+ YKSGV + T CG   + ++H VV VGYG   G  YW+I+NSWG NWGD GY K++   +     CGIA   SYP
Sbjct:  252 EKSLKKAVAH-QPVSVAIEASSQAFQLYKSGVMTGT-CG---ISLDHGVVVVGYGSTSGEDYWIIRNSWGLNWGDSGYVKLQRNIDDPFGKCGIAMMPSYP 347          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATC_SCHMA (Cathepsin C OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = -2
Query:  317 PVSVAFEVVDGFRFYKSGVYSSTKCGN-----TPMDV-NHAVVAVGYGVE--DGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 547
            P  V FEV + F+FYK G+Y  T          P ++ NHAV+ VGYGV+   G PYW +KNSWG  WG+ GYF++  G + CG+
Sbjct:  359 PFPVGFEVYEDFQFYKEGIYHHTTVQTDHYNFNPFELTNHAVLLVGYGVDKLSGEPYWKVKNSWGVEWGEQGYFRILRGTDECGV 443          
The following BLAST results are available for this feature:
BLAST of CB305068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CATV_NPVHC7.516e-1643.82Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATC_HUMAN7.516e-1645.35Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=... [more]
CYSEP_RICCO9.817e-1641.46Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CATM_MOUSE9.817e-1645.19Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
CATC_BOVIN9.817e-1645.35Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 ... [more]
CATC_PONAB1.282e-1545.35Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=... [more]
CATC_CANFA1.282e-1543.14Dipeptidyl-peptidase 1 (Fragment) OS=Canis familia... [more]
CPR1_DROME1.674e-1534.75Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CPR1_ARATH1.674e-1547.52Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
CATC_SCHMA1.674e-1545.88Cathepsin C OS=Schistosoma mansoni PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305068 ID=CB305068; Name=CB305068; organism=Citrus sinensis; type=EST; length=647bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGCATTGACAAAATATATAT
AACATCGGTGGTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCT
CAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTAT
ATGGACATTAATCTCCGAATTTATTTTGTACATAAAGCCAACCATTCTGC
TATCATGCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTG
ATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGT
ATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTA
AAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCA
ATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACAGCATGGT
TCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTC
TTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCG
AACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGT
TGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAATTTG
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