CB305074

Overview
NameCB305074
Unique NameCB305074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305074_ssr172 microsatellite CB305074_ssr172:172..187. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:451..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305074 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26
Identity = 65/112 (58.04%), Postives = 77/112 (68.75%), Query Frame = -3
Query:  263 NARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 589
            N R+DWKETP AHVF ADLPG+R         +G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT           KAI ISG
Sbjct:   39 NVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CB305074 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = -3
Query:  317 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 586
            AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of CB305074 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = -3
Query:  317 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 592
            ++AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of CB305074 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.632e-23
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = -3
Query:  320 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 586
            AR+DWKET + H    D+PGL+         E  +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   71 ARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of CB305074 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = -3
Query:  263 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 484
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB305074 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.090e-21
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  317 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 592
            + A +DWKET  AHVF AD+PG+R         E ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   68 STASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of CB305074 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = -3
Query:  320 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 607
            + +  + AR+DW+ET  AH    D+PG+R         + R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CB305074 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18
Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = -3
Query:  317 ETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 607
            +TS FAN  I+ +ET +A+VF+ADLP G++         EG +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:   34 DTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of CB305074 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = -3
Query:  317 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 607
            E +  A AR DWKETP+AHV   D+PG+R         E  R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   65 EPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of CB305074 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.137e-15
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  320 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLTV 592
            + A IDW E+  +H+FK ++PG           EG +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLTV
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTV 115          
The following BLAST results are available for this feature:
BLAST of CB305074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ1.432e-2658.0416.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN4.607e-2557.7822.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA4.607e-2555.4322.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH5.632e-2353.9322.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN1.255e-2274.32Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS189_ORYSJ3.090e-2151.0918.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ1.099e-1846.0023.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ7.124e-1848.9817.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS219_ORYSJ1.215e-1746.6721.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH1.137e-1544.7915.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305074 ID=CB305074; Name=CB305074; organism=Citrus sinensis; type=EST; length=609bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCATTACAAAATATATTTTA
TTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTG
GCTCCTGAAGCTCTTGCAAACACACAAACATAATCACAAAATTAAACAGG
GGGGAAGGGAAGCTCTTGCAAACACACACACACACACAAGGGCTTTGCTT
TCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTAC
ACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCT
CCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCC
TTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAA
CTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCT
GCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACC
TCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATAC
ATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGG
ATGTTTCCC
back to top