CB305083

Overview
NameCB305083
Unique NameCB305083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.837e-11
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI N
Sbjct:    7 LACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA1_OSCBR (60S acidic ribosomal protein P1 OS=Oscheius brevesophaga GN=rpl-21 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = -3
Query:  396 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLI 557
            LAC YA LIL DD +AIT DKIA L+KAAN+  E +WP LFAK LE  ++ +LI
Sbjct:    7 LACVYAALILQDDEVAITGDKIATLLKAANIEFEPFWPGLFAKALEGVDVKNLI 60          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA1_DICDI (60S acidic ribosomal protein P1 OS=Dictyostelium discoideum GN=rplp1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 29/56 (51.79%), Postives = 43/56 (76.79%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LAC Y+ L+L DDGI IT DKI  L++AAN+++ S+WP L+A+ L K N+ +L++N
Sbjct:    9 LACIYSGLLLQDDGIEITADKIKTLLEAANITVASHWPGLYARSLAKVNIPELLLN 64          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA1_CHICK (60S acidic ribosomal protein P1 OS=Gallus gallus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   ++  LI N
Sbjct:    7 LACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANIDIGSLICN 62          
The following BLAST results are available for this feature:
BLAST of CB305083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RLA1_BOVIN1.837e-1155.3660S acidic ribosomal protein P1 OS=Bos taurus GN=R... [more]
RLA1_OSCBR2.399e-1161.1160S acidic ribosomal protein P1 OS=Oscheius breves... [more]
RLA1_DICDI5.345e-1151.7960S acidic ribosomal protein P1 OS=Dictyostelium d... [more]
RLA1_CHICK6.981e-1153.5760S acidic ribosomal protein P1 OS=Gallus gallus G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305083 ID=CB305083; Name=CB305083; organism=Citrus sinensis; type=EST; length=559bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAATTGATCCACAATAC
TTGTATACATCCAGAATCTCGAACACACAATGCAGAACCAAAGCAACTAC
TTAACACTTTCTGTTCACTCAAGGTTACCTATACTTCAAATCTTAACAAA
CAAAGATAGATACTACTAATAGGTCAAAAAGACAATTAATCTCAAGAGTT
GTAAACCAGCACCAGACCAAATCATTCTGAAAGGAGCTCCTAATCAAACA
AGCTGAAGCCCATATCTTCGTCACTTTCCTCCTTGGGTTCTTCCTTCTTC
TCCTCCGGGGGGGGAGCAGCAGCATCAGCCCCAGCACCTCCAGCAGGAGT
TGCAACAGCAACTGCACCACCGCCACCACCAGACCCCACATTCATTATAA
GATCATCTAAGTTCCGCTTCTCTAAGAGCTTAGCAAACAAACTGGGCCAG
TAAGATTCAATAGACACGTTGGCAGCCTTCACCAGTTGTGCAATCTTATC
CGTAGTAATGGCGATGCCGTCATCGTGGAGGATCAAACAGGCATAAGTAC
AAGCAAGCT
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