CB305090

Overview
NameCB305090
Unique NameCB305090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:872..1385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALGL_HOPST (Calglandulin OS=Hoplocephalus stephensii PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L+ AF+VFDK+  G+I    L++V+ N GE L + E + M++EAD DGDG I+YEEFV +M
Sbjct:   87 LRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMM 147          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: TNNC2_RANES (Troponin C, skeletal muscle OS=Rana esculenta PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 26/61 (42.62%), Postives = 48/61 (78.69%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L E FR+FDK+ +G+I + EL  ++ + GE +TDEE++E++++ D + DG+I+++EF+K+M
Sbjct:   98 LAECFRIFDKNADGYIDSEELGEILRSSGESITDEEIEELMKDGDKNNDGKIDFDEFLKMM 158          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: MLE_HALRO (Myosin catalytic light chain, smooth muscle OS=Halocynthia roretzi PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = -2
Query:  328 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 507
            E  RVFDK+ NG I  AELRHV++ LGEK+++EEV+E + +   D +G I+YEEF K ++
Sbjct:   90 EGLRVFDKENNGKIMGAELRHVLSTLGEKMSEEEVEESLLQGQQDPNGCIHYEEFSKYLL 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: MLEC_CHICK (Myosin light chain 1, cardiac muscle OS=Gallus gallus PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -2
Query:  325 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 507
            E  RVFDK+ NG +  AELRHV+  LGE+LT+EEVD+++   + D +G INYE FVK +MA
Sbjct:  134 EGLRVFDKEGNGTVMGAELRHVLRTLGERLTEEEVDKLMAGQE-DANGCINYEAFVKHIMA 193          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CML19_ARATH (Calcium-binding protein CML19 OS=Arabidopsis thaliana GN=CML19 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L +AF++ D D NG IS  +++ +   LGE  TD +++EMI EAD D DG++N EEF+K+M
Sbjct:  101 LSKAFKIIDHDNNGKISPRDIKMIAKELGENFTDNDIEEMIEEADRDKDGEVNLEEFMKMM 161          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica GN=CML18 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L+EAFR++D D NG ISA EL  V+  LG+K +  +   MIR  D DGDG +N++EF K+M
Sbjct:   91 LREAFRMYDADSNGKISARELHRVLRQLGDKCSVADCSRMIRSVDADGDGCVNFDEFKKMM 151          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: MLR4_SCHPO (Myosin regulatory light chain cdc4 OS=Schizosaccharomyces pombe GN=cdc4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 30/61 (49.18%), Postives = 47/61 (77.05%), Query Frame = -2
Query:  325 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 507
            + F+VFDKD  G I   ELR+V+T+LGEKL++EE+DE+++   V  DG +NY +FV++++A
Sbjct:   81 KGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMILA 140          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = -2
Query:  325 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 513
            L+ AFRVFD D NG ISAAEL  V+  LGEK T ++   MI   D +GDG I++EEF KVMMA
Sbjct:  115 LRHAFRVFDADGNGTISAAELARVLHGLGEKATVQQCRRMIEGVDQNGDGLISFEEF-KVMMA 176          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CDPKT_ARATH (Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L EAF+ FDKD++GFI+  EL+H MT  G    D  +DE+I + D D DG+INYEEFV +M
Sbjct:  462 LIEAFKYFDKDRSGFITRDELKHSMTEYGMG-DDATIDEVINDVDTDNDGRINYEEFVAMM 521          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CATR_DUNSA (Caltractin OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = -2
Query:  331 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 507
            +AF++FD D  GFI+   L+ V   LGE LTDEE+ EM  EAD +GDGQI+ +EF ++M
Sbjct:  105 KAFKLFDDDNTGFITLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIM 163          
The following BLAST results are available for this feature:
BLAST of CB305090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
CALGL_HOPST1.992e-1150.82Calglandulin OS=Hoplocephalus stephensii PE=2 SV=1[more]
TNNC2_RANES2.601e-1142.62Troponin C, skeletal muscle OS=Rana esculenta PE=1... [more]
MLE_HALRO2.601e-1151.67Myosin catalytic light chain, smooth muscle OS=Hal... [more]
MLEC_CHICK2.601e-1155.74Myosin light chain 1, cardiac muscle OS=Gallus gal... [more]
CML19_ARATH3.397e-1147.54Calcium-binding protein CML19 OS=Arabidopsis thali... [more]
CML18_ORYSJ3.397e-1150.82Probable calcium-binding protein CML18 OS=Oryza sa... [more]
MLR4_SCHPO4.437e-1149.18Myosin regulatory light chain cdc4 OS=Schizosaccha... [more]
CML10_ORYSJ4.437e-1158.73Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CDPKT_ARATH4.437e-1154.10Calcium-dependent protein kinase 29 OS=Arabidopsis... [more]
CATR_DUNSA4.437e-1152.54Caltractin OS=Dunaliella salina PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305090 ID=CB305090; Name=CB305090; organism=Citrus sinensis; type=EST; length=514bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAACATCGCAAGGGTAGAAA
TTAATGAAACACATTAAACAGACAACAACATTCATAGAACAGCAGAACAA
CTAAAATAATAAAAACCGAAAAGTTTTGCGAGTCACAAGACATATTGACG
AGGGAGACAACATTCTTCCTACACCATCAGGCCCATCACCATTAAAAGAC
CATTGCTTCCTTTAGCCTGACCCTCATGACTATCAAATTAAAAATTGTAA
AAGAGAAAACTAGGAATCCCTTTATAATTTAGTCAACCCATTTTATAAGT
ATTGGGGGGTTGGGGTCATTACTTGGCCATCATAACCTTGACAAATTCCT
CATAATTTATCTGGCCATCACCATCAACATCAGCTTCCCTTATCATCTCA
TCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTTTGTCATCACATGGCG
CAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCCGGA
AGGCCTCTTTCAGC
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