CB305090

Overview
NameCB305090
Unique NameCB305090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:872..1385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.525e-11
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = -2
Query:  331 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 507
            +AF++FD D+ G IS   L+ V   LGE L+DEE+ EMI EAD DGDG++N +EF+++M
Sbjct:  108 KAFKLFDDDETGKISFKNLKRVAKELGENLSDEELQEMIDEADRDGDGEVNEQEFLRIM 166          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CATR_NAEGR (Caltractin OS=Naegleria gruberi GN=CTN PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.525e-11
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            + +AFR+FD+D +GFI+ A L+ V  +LGE +TDEE+ EMI EAD    GQI+ E+F+++M
Sbjct:  106 IMKAFRLFDEDDSGFITFANLKRVAKDLGENMTDEELREMIEEADRSNQGQISKEDFLRIM 166          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CETN2_HUMAN (Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = -2
Query:  331 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 507
            +AF++FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG+++ +EF+++M
Sbjct:  108 KAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 166          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALGL_TROCA (Calglandulin OS=Tropidechis carinatus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L+ AF+VFDK+  G+I    L++V+ N GE L + E + M++EAD DGDG I+YEEFV +M
Sbjct:   87 LRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMM 147          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALGL_PSETE (Calglandulin OS=Pseudonaja textilis PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L+ AF+VFDK+  G+I    L++V+ N GE L + E + M++EAD DGDG I+YEEFV +M
Sbjct:   87 LRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMM 147          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALGL_PSEPO (Calglandulin OS=Pseudechis porphyriacus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L+ AF+VFDK+  G+I    L++V+ N GE L + E + M++EAD DGDG I+YEEFV +M
Sbjct:   87 LRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMM 147          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALGL_PSEAU (Calglandulin OS=Pseudechis australis PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L+ AF+VFDK+  G+I    L++V+ N GE L + E + M++EAD DGDG I+YEEFV +M
Sbjct:   87 LRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMM 147          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALGL_OXYSC (Calglandulin OS=Oxyuranus scutellatus scutellatus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L+ AF+VFDK+  G+I    L++V+ N GE L + E + M++EAD DGDG I+YEEFV +M
Sbjct:   87 LRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMM 147          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALGL_OXYMI (Calglandulin OS=Oxyuranus microlepidotus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L+ AF+VFDK+  G+I    L++V+ N GE L + E + M++EAD DGDG I+YEEFV +M
Sbjct:   87 LRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMM 147          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALGL_NOTSC (Calglandulin OS=Notechis scutatus scutatus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L+ AF+VFDK+  G+I    L++V+ N GE L + E + M++EAD DGDG I+YEEFV +M
Sbjct:   87 LRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMM 147          
The following BLAST results are available for this feature:
BLAST of CB305090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
CETN2_BOVIN1.525e-1152.54Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1[more]
CATR_NAEGR1.525e-1150.82Caltractin OS=Naegleria gruberi GN=CTN PE=2 SV=1[more]
CETN2_HUMAN1.992e-1152.54Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1[more]
CALGL_TROCA1.992e-1150.82Calglandulin OS=Tropidechis carinatus PE=2 SV=1[more]
CALGL_PSETE1.992e-1150.82Calglandulin OS=Pseudonaja textilis PE=2 SV=1[more]
CALGL_PSEPO1.992e-1150.82Calglandulin OS=Pseudechis porphyriacus PE=2 SV=1[more]
CALGL_PSEAU1.992e-1150.82Calglandulin OS=Pseudechis australis PE=2 SV=1[more]
CALGL_OXYSC1.992e-1150.82Calglandulin OS=Oxyuranus scutellatus scutellatus ... [more]
CALGL_OXYMI1.992e-1150.82Calglandulin OS=Oxyuranus microlepidotus PE=2 SV=1[more]
CALGL_NOTSC1.992e-1150.82Calglandulin OS=Notechis scutatus scutatus PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305090 ID=CB305090; Name=CB305090; organism=Citrus sinensis; type=EST; length=514bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAACATCGCAAGGGTAGAAA
TTAATGAAACACATTAAACAGACAACAACATTCATAGAACAGCAGAACAA
CTAAAATAATAAAAACCGAAAAGTTTTGCGAGTCACAAGACATATTGACG
AGGGAGACAACATTCTTCCTACACCATCAGGCCCATCACCATTAAAAGAC
CATTGCTTCCTTTAGCCTGACCCTCATGACTATCAAATTAAAAATTGTAA
AAGAGAAAACTAGGAATCCCTTTATAATTTAGTCAACCCATTTTATAAGT
ATTGGGGGGTTGGGGTCATTACTTGGCCATCATAACCTTGACAAATTCCT
CATAATTTATCTGGCCATCACCATCAACATCAGCTTCCCTTATCATCTCA
TCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTTTGTCATCACATGGCG
CAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCCGGA
AGGCCTCTTTCAGC
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