CB305090

Overview
NameCB305090
Unique NameCB305090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:872..1385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: MYL9_PONAB (Myosin regulatory light polypeptide 9 OS=Pongo abelii GN=MYL9 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM REA +D  G  NY EF +++
Sbjct:  103 IRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 163          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: MYL9_PIG (Myosin regulatory light polypeptide 9 OS=Sus scrofa GN=MYL9 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM REA +D  G  NY EF +++
Sbjct:  103 IRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 163          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: MYL9_MOUSE (Myosin regulatory light polypeptide 9 OS=Mus musculus GN=Myl9 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM REA +D  G  NY EF +++
Sbjct:  103 IRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 163          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: MYL9_HUMAN (Myosin regulatory light polypeptide 9 OS=Homo sapiens GN=MYL9 PE=1 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM REA +D  G  NY EF +++
Sbjct:  103 IRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 163          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: MYL3_BOVIN (Myosin light chain 3 OS=Bos taurus GN=MYL3 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = -2
Query:  325 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 507
            E  RVFDK+ NG +  AELRHV+  LGEKLT++EV++++   + D +G INYE FVK +MA
Sbjct:  139 EGLRVFDKEGNGTVMGAELRHVLATLGEKLTEDEVEKLMAGQE-DSNGCINYEAFVKHIMA 198          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: MLRM_CHICK (Myosin regulatory light chain 2, smooth muscle major isoform OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM REA +D  G  NY EF +++
Sbjct:  103 IRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 163          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CDC31_YEAST (Cell division control protein 31 OS=Saccharomyces cerevisiae GN=CDC31 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = -2
Query:  334 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 513
            +K AF++FD D  G IS   LR V   LGE LTDEE+  MI E D+DGDG+IN  EF+ +
Sbjct:   98 IKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAI 157          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALL6_HUMAN (Calmodulin-like protein 6 OS=Homo sapiens GN=CALML6 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            L+ AFRVFDK+  G+I    L++V+ N GE L + E ++M++EAD DGD  I+YEEFV +M
Sbjct:  112 LRAAFRVFDKEGKGYIDWNTLKYVLMNAGEPLNEVEAEQMMKEADKDGDRTIDYEEFVAMM 172          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CABP3_HUMAN (Calcium-binding protein 3 OS=Homo sapiens GN=CABP3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 31/62 (50.00%), Postives = 48/62 (77.42%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            +++AF+ FD + +G I+ AEL+  M  L GE+LT  E+ E++READV+GDG +++EEFVK+M
Sbjct:  129 MRDAFKEFDTNGDGEITLAELQQAMQRLLGERLTPREISEVVREADVNGDGTVDFEEFVKMM 190          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: TNNC_TODPA (Troponin C OS=Todarodes pacificus PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = -2
Query:  328 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 513
            L+ AFRV DK+  G I   +LR ++ +LG+ L D+E+ +MI E D DG G ++YEEF  +M+
Sbjct:   86 LRSAFRVLDKNNQGVIDVEDLRWILKSLGDDLNDDEIQDMINETDTDGSGTVDYEEFSALML 147          
The following BLAST results are available for this feature:
BLAST of CB305090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
MYL9_PONAB5.795e-1145.90Myosin regulatory light polypeptide 9 OS=Pongo abe... [more]
MYL9_PIG5.795e-1145.90Myosin regulatory light polypeptide 9 OS=Sus scrof... [more]
MYL9_MOUSE5.795e-1145.90Myosin regulatory light polypeptide 9 OS=Mus muscu... [more]
MYL9_HUMAN5.795e-1145.90Myosin regulatory light polypeptide 9 OS=Homo sapi... [more]
MYL3_BOVIN5.795e-1154.10Myosin light chain 3 OS=Bos taurus GN=MYL3 PE=1 SV... [more]
MLRM_CHICK5.795e-1145.90Myosin regulatory light chain 2, smooth muscle maj... [more]
CDC31_YEAST5.795e-1153.33Cell division control protein 31 OS=Saccharomyces ... [more]
CALL6_HUMAN5.795e-1150.82Calmodulin-like protein 6 OS=Homo sapiens GN=CALML... [more]
CABP3_HUMAN5.795e-1150.00Calcium-binding protein 3 OS=Homo sapiens GN=CABP3... [more]
TNNC_TODPA7.568e-1145.16Troponin C OS=Todarodes pacificus PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305090 ID=CB305090; Name=CB305090; organism=Citrus sinensis; type=EST; length=514bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAACATCGCAAGGGTAGAAA
TTAATGAAACACATTAAACAGACAACAACATTCATAGAACAGCAGAACAA
CTAAAATAATAAAAACCGAAAAGTTTTGCGAGTCACAAGACATATTGACG
AGGGAGACAACATTCTTCCTACACCATCAGGCCCATCACCATTAAAAGAC
CATTGCTTCCTTTAGCCTGACCCTCATGACTATCAAATTAAAAATTGTAA
AAGAGAAAACTAGGAATCCCTTTATAATTTAGTCAACCCATTTTATAAGT
ATTGGGGGGTTGGGGTCATTACTTGGCCATCATAACCTTGACAAATTCCT
CATAATTTATCTGGCCATCACCATCAACATCAGCTTCCCTTATCATCTCA
TCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTTTGTCATCACATGGCG
CAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCCGGA
AGGCCTCTTTCAGC
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