CB305105

Overview
NameCB305105
Unique NameCB305105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2148 contig Csv1_Contig2148:391..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.396e-37
Identity = 77/123 (62.60%), Postives = 87/123 (70.73%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPV--NQKASCC 638
            AHGI +VYDVTD +SFNNVKQWL EIDRYA+E VNKLLVGNK D+TDKKVV Y  AK FAD +GIPF+ETSAK++ NVEQAF+ M   IK RM S  A NN +       G  V  N    CC
Sbjct:   81 AHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHGVSNNSSGGCC 203          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.499e-37
Identity = 79/121 (65.29%), Postives = 89/121 (73.55%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            AHGII+VYDVTD+ES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    R P ++I   PV      C
Sbjct:   81 AHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.279e-36
Identity = 78/122 (63.93%), Postives = 91/122 (74.59%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQP-AMNNARPPTVQIKGQPVNQKASCC 638
            AHGIIIVYDVTDQ+SFNNVKQWL EIDRYA E VN+LLVGNK D+ DKKVV Y  AK FAD + IPF+ETSAKDS NVEQAF+ M+  IK RM +   A +NA+      +G  V+Q +S C
Sbjct:   81 AHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNC 202          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.671e-36
Identity = 77/121 (63.64%), Postives = 90/121 (74.38%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            AHGII+VYDVTDQESFNNVKQWL+EIDRYA ENVNKLLVGNK DLT K+VVS + AK FA+ +GI F+ETSAK++ NVE+AFM M A IK RMA+ P    A       +  P N  + CC
Sbjct:   81 AHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPKAGVKLTPGQQVPSNGGSKCC 201          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.671e-36
Identity = 76/122 (62.30%), Postives = 90/122 (73.77%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM-ASQPAMNNARPPTVQIKGQPVNQKASCC 638
            AHGII+VYDVTD+ +F NV+QWL EIDR+A ENVNKLLVGNK DL  KKVV + TAKAFAD + IPF+ETSAK S NVEQAFM M  +IKNR+ ASQP     +   V     P++ K+ CC
Sbjct:   81 AHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.414e-35
Identity = 76/121 (62.81%), Postives = 88/121 (72.73%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            AHG ++VYDVTDQES+ NVKQWL EIDR+ASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK +M    A    R P ++I   PV      C
Sbjct:   81 AHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.487e-32
Identity = 72/126 (57.14%), Postives = 83/126 (65.87%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP----TVQIKGQPV-NQKASCC 638
            +HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVGNKCDL DK+VV Y+ AK FAD   +PF+ETSA DS NVE AF+ M   IK  M+ Q      +       V +KGQ + N    CC
Sbjct:   81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGGCC 206          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.618e-31
Identity = 67/123 (54.47%), Postives = 84/123 (68.29%), Query Frame = -1
Query:  279 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKG---QPVNQKASC 638
            AHGII+VYDVTD  SFNNVKQW+ EI RYA ++V +LLVGNKCDL +KK+V   TA+ +AD +GIPF+ETSAK S NVEQAFM M ++IK         NN+      +K     P+ +K  C
Sbjct:   81 AHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKC 203          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.760e-31
Identity = 67/112 (59.82%), Postives = 83/112 (74.11%), Query Frame = -1
Query:  303 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQ 638
            A GII+VYD TDQ+SF NVKQW+ EIDRYA ENVNKLLVGNK DL ++KVV    AK+FA+  GIPF+ETSAK++ NVE+ F++M  DIKNR+A        +P  V IK +
Sbjct:   83 AQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD--IQETPKPDEVDIKSK 192          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.374e-29
Identity = 61/124 (49.19%), Postives = 89/124 (71.77%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ---IKGQPVNQKASCC 638
            A GI++VYDVTD++SF N++ W+  I+++A+++VNK+L+GNKCD+ +KKVV     K+ ADE GI F+ETSAK+S+NVE+AF+++  DIK RM   P   N +P  VQ     G   N+K +CC
Sbjct:   88 AMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP---NEQPQVVQPGTNLGANNNKKKACC 208          
The following BLAST results are available for this feature:
BLAST of CB305105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
YPT1_NEUCR4.396e-3762.60GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB1B_MACFA7.499e-3765.29Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
YPT1_SCHPO1.279e-3663.93GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
YPT1_PHYIN1.671e-3663.64Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1A_DICDI1.671e-3662.30Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB1C_HUMAN1.414e-3562.81Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
YPT1_YEAST9.487e-3257.14GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1B_DICDI1.618e-3154.47Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB1D_DICDI2.760e-3159.82Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB8A_DICDI3.374e-2949.19Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305105 ID=CB305105; Name=CB305105; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAAANNNACAATTTA
ATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCATATAAT
AGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTA
GTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGG
TTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGA
AGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACC
GGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGG
TTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTT
GTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCA
ATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATC
AGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTG
CATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCT
TGGTCTGTAACATCATAAACAATGATAATGCCATGTGC
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