CB305108

Overview
NameCB305108
Unique NameCB305108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: R27A1_ENTHI (60S ribosomal protein L27a-1 OS=Entamoeba histolytica GN=rpl27a-1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.281e-25
Identity = 54/106 (50.94%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  179 FDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 484
            F  +HP +FGK GMR FH   NK++CP +N+D LWS+V +D++A+       + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   45 FTTFHPDYFGKHGMRVFHLKANKYYCPSINVDSLWSLVGKDIQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_DROME (60S ribosomal protein L27a OS=Drosophila melanogaster GN=RpL27A PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 8.203e-25
Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKD---NVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I FDKYHPG+FGKVGMR FH  R     P +N+DKLWS+V  +  A+  K+     P+ID+ +FGY+K+LG+G LP  +PV+VKAK  SK AE KIK+AGG  +L+A
Sbjct:   44 INFDKYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: R27A3_ENTHI (60S ribosomal protein L27a-3 OS=Entamoeba histolytica GN=rpl27a-3 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.399e-24
Identity = 55/106 (51.89%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  179 FDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDV----KAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 484
            F  +HP +FGK GMR FH   NK++CP +N+D LWS+V +DV    K   + + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   45 FTTFHPDYFGKHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: R27A1_ARATH (Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana GN=RPL27AA PE=5 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.891e-21
Identity = 59/98 (60.20%), Postives = 62/98 (63.27%), Query Frame = -3
Query:  182 PGFFGK--VGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 469
            PG  G   VGMRYFHKLRNKF+C IVN+DKLWSMV                          LGKG LPEN+PVVVKAKLVS T EKKIKEAG AVVLT
Sbjct:   29 PGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMV--------------------------LGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVVLT 100          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_TRYBB (60S ribosomal protein L27a OS=Trypanosoma brucei brucei GN=RPL27A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.226e-20
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV-PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I F KYHPG+FGK GM ++HK +N    P +N+D L  ++ +D   KA K  V P+ID+   GY K+LG G L    P +VKA+ VSK A+KKI++AGGAVVL A
Sbjct:   43 INFRKYHPGYFGKCGMNHYHKKKNTTWKPTINLDNLTKLMAKDEAMKAKKGEVLPVIDLLANGYSKLLGNGHL--QAPCIVKARWVSKLADKKIRKAGGAVVLQA 145          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_TENMO (60S ribosomal protein L27a OS=Tenebrio molitor GN=RpL27A PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.150e-19
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKAS---KDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I FDKYHPG+FGK+GMR +H  RN    P +N+DKLW++V +  ++K     +   P+ID+ + GY+K+LGKG    N   ++K        E KIK  GGA VL+A
Sbjct:   43 INFDKYHPGYFGKLGMRNYHLRRNSKWAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKAGYYKLLGKGACLTNLS-LLKPSFSLNRLEDKIKAVGGACVLSA 148          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_ENCCU (60S ribosomal protein L27a OS=Encephalitozoon cuniculi GN=RPL27A PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.895e-13
Identity = 36/103 (34.95%), Postives = 65/103 (63.11%), Query Frame = -3
Query:  182 FDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAK--ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 484
            F ++HP + GK GMR +H+  N  +   ++  +LW M+P++ +     + + VP+IDV +FGY  V+G G L   +P+VVKA+  + +A+++I + GG  ++T
Sbjct:   45 FTRFHPDYHGKRGMRVYHRKENSDYARPISSARLWGMIPKEQRYDFLDNPEKVPVIDVREFGYHVVVG-GKLSLERPIVVKARYFTPSAKEEITKVGGKWIIT 146          
The following BLAST results are available for this feature:
BLAST of CB305108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
R27A1_ENTHI6.281e-2550.9460S ribosomal protein L27a-1 OS=Entamoeba histolyt... [more]
RL27A_DROME8.203e-2554.2160S ribosomal protein L27a OS=Drosophila melanogas... [more]
R27A3_ENTHI1.399e-2451.8960S ribosomal protein L27a-3 OS=Entamoeba histolyt... [more]
R27A1_ARATH1.891e-2160.20Putative 60S ribosomal protein L27a-1 OS=Arabidops... [more]
RL27A_TRYBB1.226e-2050.4860S ribosomal protein L27a OS=Trypanosoma brucei b... [more]
RL27A_TENMO5.150e-1943.9360S ribosomal protein L27a OS=Tenebrio molitor GN=... [more]
RL27A_ENCCU1.895e-1334.9560S ribosomal protein L27a OS=Encephalitozoon cuni... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305108 ID=CB305108; Name=CB305108; organism=Citrus sinensis; type=EST; length=492bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAAAATGAGATTCAGGTC
ACATTTAATCATTAAGCGAGAGATATACCCAAAAAAAAAGATAAAAACAT
TGTGATTTAAATAAGTCTCAACAGATCCCAGAATAAAACAAAACCCCTAG
ACAAGGGAGAGTTACCAAAATAACCCTAAGCTGTGAGCACAACAGCGCCA
CCAGCCTCTTTGATCTTCTTCTCAGCGGTCTTAGAAACGAGCTTGGCCTT
GACAACGACGGGCTGGTTCTCCGGCAAAACACCTTTGCCCAAAACCTTAA
AGTAGCCGAACTGAGTGACATCAATCATCGGAACATTGTCCTTGCTGGCC
TTTGCTTTCACATCTTGCGGGACCATGGACCAGAGCTTGTCGATGTTGAC
GATGGGGCAGTGGAATTTGTTGCGGAGTTTGTGGAAGTACCTCATACCGA
CTTTACCAAAAAAACCAGGATGGTACTTGTCGAAAAGGATTC
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