CB305130

Overview
NameCB305130
Unique NameCB305130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_SULTO (Translation initiation factor 6 OS=Sulfolobus tokodaii GN=eif6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.682e-12
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = -3
Query:  234 VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 626
            V V+ ++ R +ALGN I  N + AL + +L     + I + L ++ + + +IA  I VGS    +++ GLVH  T+ E+LD+LS L +V +  GTVN GS  I +GL  N      GS TT  E+  I+  F
Sbjct:   90 VRVEILDIRPTALGNIILTNSYGALIYPELSSIEFKKIKESLQIDNIEKGSIANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIANRNGVLVGSATTGPEILRIQRAF 221          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_NATPD (Translation initiation factor 6 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif6 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 44/126 (34.92%), Postives = 61/126 (48.41%), Query Frame = -3
Query:  243 VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 620
            V  +   ++A GN +  N+  A  H DL R+    I + L V V R  IA    VG+    ++ G L HP T+ E LD L  L  V    GT+N G  ++ +GL  N+     G +TT  EL  IE
Sbjct:   89 VVELPGNINAAGNVVLANNEGAFVHPDLSRDALSAIEEALSVPVERGRIADVQTVGTAAVVTDDGVLSHPKTTDEKLDFLEELFGVYADIGTINYGGPLVGSGLVANNTGYIAGEETTGPELGRIE 214          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 49/132 (37.12%), Postives = 71/132 (53.79%), Query Frame = -3
Query:  228 VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 620
            V+ I+ + +ALGN I  ND  AL   +L ++ ++ I D L VEV   TIA    VGS    +N+G L HP    ++L+ L +L +V  +  GT N+G+  + A +  N   A  G DTT  EL +IE    L
Sbjct:   97 VEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 36/114 (31.58%), Postives = 60/114 (52.63%), Query Frame = -3
Query:  255 SALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATEL 596
            +ALGN + CN+   +  ++L+R+    I++ LGVE   + I    + GS    +++GG++HP  S ++  EL  + +V     TVN G   I +GL  N+     G  TT  E+
Sbjct:  102 TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIANNKGIIVGEYTTGPEI 215          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = -3
Query:  234 VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 626
            VV++ + E  + +GN +  ND+  +    L +   + IAD LGVE  + +I     VGS    +NRG  + P  + E++  +   L+V     TVNRG   +  GL  N   A  G DTT  E+  ++ +F
Sbjct:   93 VVLEDVRE--TGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVANSKGALVGEDTTGHEMMQLQRIF 221          
The following BLAST results are available for this feature:
BLAST of CB305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IF6_SULTO1.682e-1237.12Translation initiation factor 6 OS=Sulfolobus toko... [more]
IF6_NATPD3.748e-1234.92Translation initiation factor 6 OS=Natronomonas ph... [more]
IF6_METJA3.748e-1237.12Translation initiation factor 6 OS=Methanocaldococ... [more]
IF6_STAMF1.860e-1131.58Translation initiation factor 6 OS=Staphylothermus... [more]
IF6_THEPD4.144e-1131.30Translation initiation factor 6 OS=Thermofilum pen... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305130 ID=CB305130; Name=CB305130; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGAATATGATACTTCTGA
TTGAGATACAAGATTCTGGAAAATAACATACTATCATTAAGGGAAAACAT
CTTCAGAGTTGACAAACACCGCTTCAACTTCATGACAAAAAAGACTGTAA
GCCAAAGTAACTTAAACATAACCGTCAATTAAAGATTTCCTCATCTCGTC
CACAAGGGCACTAGGTTGAGCTTCCCTCAACTTGAAAACACTCTCAATAA
CAGAGAGTTCAGTTGCTGTGGTGTCTGATCCACAGAATGCTGTCCAGTCA
TTCACAGTTAACCCAGCAGCTATGACTTCGCTTCCACGGTTCACAGTCCC
AGCCACCAAAGGTACTTGCAAGAGAGTTGAAAGTTCATCCAAGTCCTCAA
TGGATGTGTGAGGGTGAACCAAGCCTCCTCTGTTGGAGAAGGAACAGTAA
CTGCCAACAAGGATATTACCAGCAATTGTCTGCCTAAAAACTTCTACTCC
AAGAACATCTGCAATCATTTCCTCTGTTTCCCTGTCAAGATCTGTGTGTG
TAAGAGCAACATGGTCGTTGCATGCTATACAGTTGCCCAGGGCAGATAGC
CTCTCTTCAATACGCTGAACGACAACTTGATCAGGTAGGC
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