CB305155

Overview
NameCB305155
Unique NameCB305155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:6..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS15A_PONAB (40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.560e-54
Identity = 101/130 (77.69%), Postives = 115/130 (88.46%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   L PSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLFPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS15B_DROME (40S ribosomal protein S15Ab OS=Drosophila melanogaster GN=RpS15Ab PE=2 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 7.261e-54
Identity = 101/130 (77.69%), Postives = 114/130 (87.69%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR++VL DALK + NAEKRGKRQV++RP SKVIIKFL VM KHGYIGEFE V+DHRAGKIVV L GRLNKCGVISPRFD  + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct:    1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVEDHRAGKIVVNLTGRLNKCGVISPRFDAPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS15A_PARLI (40S ribosomal protein S15a OS=Paracentrotus lividus GN=RPS15A PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.369e-52
Identity = 99/130 (76.15%), Postives = 114/130 (87.69%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR++VL  AL+ + NAEKR KRQV+IRP SKV IKFL+VM KHGYIGEFE VDDHR GKI+V LNGRLNKCGVISPRFDV + ++E WT+ LLPSRQFGY+VLTTS GIMDHEEARRK+VGGK+LGFF+
Sbjct:    1 MVRMNVLAAALRCICNAEKRCKRQVLIRPCSKVTIKFLMVMIKHGYIGEFEVVDDHRGGKIIVNLNGRLNKCGVISPRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS15A_ICTPU (40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.369e-52
Identity = 100/130 (76.92%), Postives = 113/130 (86.92%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR++VL DALK + NAEKRGK QV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK LGFF+
Sbjct:    1 MVRMNVLADALKCINNAEKRGKAQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKSLGFFF 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS22_AGABI (40S ribosomal protein S22 OS=Agaricus bisporus GN=rps22 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.871e-50
Identity = 95/130 (73.08%), Postives = 111/130 (85.38%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR+SVLND LKS+ NA +RGKRQV++RPSSKV++KFL VMQ+HGYIGEFE +DDHR GKI+V+LNGRLNK GVISPRF+V    IE W   LLPSR  G IVLTTS+GI+DHEEARRKNVGGK+LG+ Y
Sbjct:    1 MVRISVLNDCLKSICNASRRGKRQVIVRPSSKVVVKFLSVMQRHGYIGEFEIIDDHRGGKIIVQLNGRLNKTGVISPRFNVQHNRIEQWINYLLPSRGIGIIVLTTSSGILDHEEARRKNVGGKLLGYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS15A_DICDI (40S ribosomal protein S15a OS=Dictyostelium discoideum GN=rps15a PE=2 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 8.308e-50
Identity = 94/130 (72.31%), Postives = 112/130 (86.15%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR+SVLND L S+ NAE++GKRQV++RPSSKVI+KFL VM K  YIGEFE VDDHR+GKIV++L GR+NKCGVISPRFDV + EIE W + LLPSRQFG+IVLTTS GIMDH EA+ ++ GGK+LGFFY
Sbjct:    1 MVRISVLNDCLNSIVNAERQGKRQVLVRPSSKVIVKFLEVMMKKRYIGEFEIVDDHRSGKIVIDLIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAKTRHTGGKLLGFFY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS22_SCHPO (40S ribosomal protein S22 OS=Schizosaccharomyces pombe GN=rps22a PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.123e-49
Identity = 93/130 (71.54%), Postives = 110/130 (84.62%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR SVL D L ++ NAE+RG+RQV+IRPSSKVI+KFL VMQKHGYI EF  +DDHR+GKIV++LNGR+NKCGVISPRF+V +K+IE W  +LLPSRQ G IVLTTS GIM H EAR K+ GGK+LGFFY
Sbjct:    1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.682e-34
Identity = 68/125 (54.40%), Postives = 94/125 (75.20%), Query Frame = -2
Query:  196 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 570
            +LNDAL+++ NAE+RGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L GR+N C  ++ R DV  KEIE +T R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+VLGFFY
Sbjct:    5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_CALMQ (30S ribosomal protein S8P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps8p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.066e-33
Identity = 70/130 (53.85%), Postives = 92/130 (70.77%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV + VL++AL S+ NAE RG RQV+I PSSK+I   L VMQ++GY+GEFEYV D R GK VV+L GR+N  G I PRF V V E++ W  + LP+RQ G ++LTTS G++ H EAR   VGG ++ + Y
Sbjct:    1 MVMLDVLSNALMSVKNAESRGDRQVIIWPSSKLIGNVLRVMQRYGYVGEFEYVYDGRGGKYVVQLLGRINDIGAIKPRFHVKVDELQKWEEKYLPARQVGILILTTSKGVVSHLEARENRVGGILVAYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.228e-33
Identity = 67/125 (53.60%), Postives = 92/125 (73.60%), Query Frame = -2
Query:  196 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 570
            +LNDAL+++ NAEKRGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L GR+N C  ++ R DV   EI  +T R LP+RQ+GYIV+TT  GI+DHEEA ++NVGG+VLGFF+
Sbjct:    5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFFH 129          
The following BLAST results are available for this feature:
BLAST of CB305155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS15A_PONAB5.560e-5477.6940S ribosomal protein S15a OS=Pongo abelii GN=RPS1... [more]
RS15B_DROME7.261e-5477.6940S ribosomal protein S15Ab OS=Drosophila melanoga... [more]
RS15A_PARLI1.369e-5276.1540S ribosomal protein S15a OS=Paracentrotus lividu... [more]
RS15A_ICTPU1.369e-5276.9240S ribosomal protein S15a OS=Ictalurus punctatus ... [more]
RS22_AGABI4.871e-5073.0840S ribosomal protein S22 OS=Agaricus bisporus GN=... [more]
RS15A_DICDI8.308e-5072.3140S ribosomal protein S15a OS=Dictyostelium discoi... [more]
RS22_SCHPO4.123e-4971.5440S ribosomal protein S22 OS=Schizosaccharomyces p... [more]
R15A5_ARATH1.682e-3454.4040S ribosomal protein S15a-5 OS=Arabidopsis thalia... [more]
RS8_CALMQ7.066e-3353.8530S ribosomal protein S8P OS=Caldivirga maquilinge... [more]
R15A2_ARATH9.228e-3353.6040S ribosomal protein S15a-2 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305155 ID=CB305155; Name=CB305155; organism=Citrus sinensis; type=EST; length=664bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTAACACATAATATCATCT
TTCTTCAACTAAAAGGTACCAATCCGAGTTTAAAAATGCATAATTAAATC
AAGTAAAACAAAGAGAAGCTAATCCATTTGCGAACAAGTTCTTCCAAAGT
ACACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGA
AAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGG
TCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGA
GGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAA
AACGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACC
ACAATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAATGTA
CCCGTGCTTTTGCATCACCAGAAGAAACTTAATGATAACCTTGGAGGATG
GTCTGATCATAACCTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTC
TTAAGAGCGTCATTCAGAACACTAACTCTCACCATTGTTGCGTAGGCAAA
TCAAAGCAGGGAGAGGCGCCTCTGAAAGAGTACGTGAGCTGCAAAAGCTA
GGGTTTTGGAGCCC
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