CB305155

Overview
NameCB305155
Unique NameCB305155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:6..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_SULIK (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.637e-31
Identity = 65/133 (48.87%), Postives = 93/133 (69.92%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_SULIA (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.27) GN=rps8p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.637e-31
Identity = 65/133 (48.87%), Postives = 93/133 (69.92%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_SULAC (30S ribosomal protein S8P OS=Sulfolobus acidocaldarius GN=rps8p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.128e-30
Identity = 63/133 (47.37%), Postives = 92/133 (69.17%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDV---GVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M  ++ L +AL ++YN E R  +Q +I P+SK+II  L VMQK GYIGEFEY+DD RAGKI+V+L GR+NKCG ISPR+ +   G+  +  +  + LPS++ G I+++T  G+M H +  R+ +GG  LG+ Y
Sbjct:    1 MPSINPLANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGKIIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGIREKIGGVTLGYVY 133          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_METBU (30S ribosomal protein S8P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps8p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.128e-30
Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV +  L DAL  + NAE  GK    IRP+SK+I   L VM   GYIG+FE+V+D +AG   VEL GR+NKCG I PR+ VGV E E W  + LP++ FG ++LTT  G++   EAR  NVGG++L F Y
Sbjct:    1 MVLLDPLADALSIIKNAEAVGKDSCTIRPASKLIGNVLKVMNDRGYIGDFEFVEDGKAGVYTVELIGRINKCGAIKPRYSVGVTEFERWEKQFLPAKNFGVLILTTPKGVISQYEARENNVGGQLLSFVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.473e-30
Identity = 63/130 (48.46%), Postives = 91/130 (70.00%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV + +L++AL ++ NAE  GKRQV+I P +K+I   L V+Q++GY+GE EY+DD R GK VV+L G++N  G I PRF V  +EI  W  + LP+RQ G +V++TS G+M H EA+ K +GG +L + Y
Sbjct:    1 MVMLDLLSNALTAIKNAEAMGKRQVVIWPVNKLIYYTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGAIRPRFPVKYREIVEWEQKYLPARQIGILVISTSQGVMSHLEAKEKKIGGVLLAYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_SULTO (30S ribosomal protein S8P OS=Sulfolobus tokodaii GN=rps8p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.513e-30
Identity = 62/133 (46.62%), Postives = 95/133 (71.43%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV ++ L +AL ++YN E R  +Q +I P+SK+II  L  MQK GYIGEFE++DD R+GKIVV+L GR+NKCG I+PR+ +  K+   +  +  R LPS++ G ++++T+ G+M H++A R+ +GG  LG+ Y
Sbjct:    1 MVNLNPLANALTTIYNNEMRRNKQAIIMPASKLIINVLRAMQKEGYIGEFEFIDDGRSGKIVVQLLGRINKCGPIAPRYPLKYKDLLTLPDYVRRYLPSKEIGVLIISTNKGVMTHKDAIRERIGGVALGYVY 133          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_METPE (30S ribosomal protein S8P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps8p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.513e-30
Identity = 58/130 (44.62%), Postives = 89/130 (68.46%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M R + + DA+ ++ NA   GK + ++ PSSK++   L +MQ  GYIG F+ +DD R G+  V L+GR+NKCG I+PR+ VG+ E+E W  R LP + FG ++L+TS G++ H +AR+  +GG++LGF Y
Sbjct:    1 MSRQNTIADAMSALKNAGDCGKPECILEPSSKLLGAMLRIMQDAGYIGSFDMIDDGRGGQFRVHLSGRINKCGAITPRYSVGLDELEYWETRYLPGKNFGLLILSTSRGVLTHNQARQNGIGGELLGFVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_THESM (30S ribosomal protein S8P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps8p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.287e-30
Identity = 63/130 (48.46%), Postives = 91/130 (70.00%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M  +  L +AL  + N+EK GK +V I+P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++NK G I PRF V  KE E W  R LP+ +FG +V++TS G+M H+EA  K +GG+++ + Y
Sbjct:    1 MTLLDPLANALSHITNSEKVGKSEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLLGKVNKAGAIKPRFSVKAKEYEKWEKRFLPAFEFGILVVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_THEGJ (30S ribosomal protein S8P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.287e-30
Identity = 61/130 (46.92%), Postives = 92/130 (70.77%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M  +  L +AL  + N+E+ GK++V I+P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++NK G I PRF V  K  E W  R LP+ +FG ++++TS G+M H+EAR K +GG+++ + Y
Sbjct:    1 MTLLDPLANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAKNYEYWEKRFLPAFEFGILIVSTSQGVMTHKEAREKGIGGRLIAYVY 130          
BLAST of CB305155 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.598e-30
Identity = 62/130 (47.69%), Postives = 89/130 (68.46%), Query Frame = -2
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV + +L++AL  + NAE  GKRQV I P +K+I   L V+Q+HGY+GE EY+DD R GK VV+L G++N  G I PR+ V  +EI  W  + LP+RQ G +V++T+ G+M H EA+ K +GG +L + Y
Sbjct:    1 MVMLDLLSNALIQIKNAEAMGKRQVAIWPVNKLIYYTLRVLQRHGYVGEVEYIDDGRGGKYVVQLLGKINDIGPIKPRYPVKYREIVQWEQKFLPARQIGILVISTNQGVMSHVEAKEKKIGGVLLAYVY 130          
The following BLAST results are available for this feature:
BLAST of CB305155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_SULIK8.637e-3148.8730S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIA8.637e-3148.8730S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULAC1.128e-3047.3730S ribosomal protein S8P OS=Sulfolobus acidocalda... [more]
RS8_METBU1.128e-3050.7730S ribosomal protein S8P OS=Methanococcoides burt... [more]
RS8_PYRCJ1.473e-3048.4630S ribosomal protein S8P OS=Pyrobaculum calidifon... [more]
RS8_SULTO2.513e-3046.6230S ribosomal protein S8P OS=Sulfolobus tokodaii G... [more]
RS8_METPE2.513e-3044.6230S ribosomal protein S8P OS=Methanosphaerula palu... [more]
RS8_THESM4.287e-3048.4630S ribosomal protein S8P OS=Thermococcus sibiricu... [more]
RS8_THEGJ4.287e-3046.9230S ribosomal protein S8P OS=Thermococcus gammatol... [more]
RS8_THENV5.598e-3047.6930S ribosomal protein S8P OS=Thermoproteus neutrop... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305155 ID=CB305155; Name=CB305155; organism=Citrus sinensis; type=EST; length=664bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTAACACATAATATCATCT
TTCTTCAACTAAAAGGTACCAATCCGAGTTTAAAAATGCATAATTAAATC
AAGTAAAACAAAGAGAAGCTAATCCATTTGCGAACAAGTTCTTCCAAAGT
ACACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGA
AAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGG
TCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGA
GGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAA
AACGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACC
ACAATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAATGTA
CCCGTGCTTTTGCATCACCAGAAGAAACTTAATGATAACCTTGGAGGATG
GTCTGATCATAACCTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTC
TTAAGAGCGTCATTCAGAACACTAACTCTCACCATTGTTGCGTAGGCAAA
TCAAAGCAGGGAGAGGCGCCTCTGAAAGAGTACGTGAGCTGCAAAAGCTA
GGGTTTTGGAGCCC
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