CB322081

Overview
NameCB322081
Unique NameCB322081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length281
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322081 vs. ExPASy Swiss-Prot
Match: CRI4_MAIZE (Putative receptor protein kinase CRINKLY4 OS=Zea mays GN=CR4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.955e-11
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 3
Query:   27 KGDVYGFGIVLLELLSGQKPLDVAGAEEGFKGNLVDWVNHLVIAGRSRDVVDKSLYGRGNDDEIMQFLRVACSCVVSRPKDRPSM 281
            K DVY FG+VLLE+LSG+K +D+   E    GN+V+W   L+ AG    ++D  L    + + + +   VAC CV  R KDRPSM
Sbjct:  691 KSDVYSFGVVLLEILSGRKAIDMQFEE----GNIVEWAVPLIKAGDIFAILDPVLSPPSDLEALKKIASVACKCVRMRGKDRPSM 771          
BLAST of CB322081 vs. ExPASy Swiss-Prot
Match: ACR4_ARATH (Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.554e-11
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 3
Query:   27 KGDVYGFGIVLLELLSGQKPLDVAGAEEGFKGNLVDWVNHLVIAGRSRDVVDKSLYGRGNDDEIMQFLRVACSCVVSRPKDRPSM 281
            K DVY FG++LLE+LSG+K +D+   E    GN+V+W   L+ AG    ++D  L      + + + + VAC CV  R KDRPSM
Sbjct:  698 KSDVYSFGVLLLEILSGRKAIDMHYEE----GNIVEWAVPLIKAGDINALLDPVLKHPSEIEALKRIVSVACKCVRMRGKDRPSM 778          
BLAST of CB322081 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 3
Query:   18 ASLKGDVYGFGIVLLELLSGQKPLDVAGAEEGFKGNLVDWVNHLVIAGRSRDVVDKSLYGRGNDDEIMQFLRVACSCVVSRPKDRPSM 281
            A+ K DVY FG+++LE+LSG++P D +  E+G   N+V W+  L+   R RD+VD +  G    + +   L +A  CV   P++RP+M
Sbjct:  482 ATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGL--NVVGWLKFLISEKRPRDIVDPNCEGM-QMESLDALLSIATQCVSPSPEERPTM 566          
The following BLAST results are available for this feature:
BLAST of CB322081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CRI4_MAIZE1.955e-1143.53Putative receptor protein kinase CRINKLY4 OS=Zea m... [more]
ACR4_ARATH2.554e-1142.35Serine/threonine-protein kinase-like protein ACR4 ... [more]
FEI1_ARATH9.703e-1138.64LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionEST0187 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB002 similar to leucine-rich repeat transmembrane protein kinase (acc# NP_174039), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322081 ID=CB322081; Name=CB322081; organism=Citrus sinensis; type=EST; length=281bp
ACTCAAGCACCATGGTTGCTTCGTTGAAAGGGGACGTTTATGGTTTTGGG
ATTGTTCTTTTAGAGTTGCTCTCAGGGCAAAAGCCTCTTGACGTGGCTGG
TGCAGAAGAAGGATTCAAGGGAAATTTGGTGGATTGGGTTAACCATCTAG
TGATCGCTGGTCGAAGCAGAGATGTTGTTGATAAGTCTCTGTATGGGAGA
GGTAATGATGATGAGATTATGCAGTTTCTGAGGGTTGCTTGTAGTTGTGT
GGTTTCAAGGCCCAAGGATAGGCCTTCTATG
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