CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_MARPO (Photosystem Q(B) protein OS=Marchantia polymorpha GN=psbA PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.339e-52
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_DUMHI (Photosystem Q(B) protein OS=Dumortiera hirsuta GN=psbA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.339e-52
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CONSU (Photosystem Q(B) protein OS=Conocephalum supradecompositum GN=psbA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.339e-52
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_VICFA (Photosystem Q(B) protein OS=Vicia faba GN=psbA PE=3 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.748e-52
Identity = 98/113 (86.73%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSA IGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAVIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIVVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_NYMAL (Photosystem Q(B) protein OS=Nymphaea alba GN=psbA PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.748e-52
Identity = 97/113 (85.84%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAI+PTSAAIGLHFYPIWEA+SVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIVPTSAAIGLHFYPIWEASSVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_SPIOG (Photosystem Q(B) protein OS=Spirodela oligorhiza GN=psbA PE=3 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 2.283e-52
Identity = 98/113 (86.73%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGV CYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVRCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_MEDSA (Photosystem Q(B) protein OS=Medicago sativa GN=psbA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.283e-52
Identity = 98/113 (86.73%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII GAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIICGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CONCI (Photosystem Q(B) protein OS=Conocephalum conicum GN=psbA PE=3 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 2.283e-52
Identity = 97/113 (85.84%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYE+IVLHFLLGVACYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYEIIVLHFLLGVACYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_GNEPA (Photosystem Q(B) protein OS=Gnetum parvifolium GN=psbA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.982e-52
Identity = 97/113 (85.84%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGAIIPTSAAIGLHFYPIWEA+SVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAIIPTSAAIGLHFYPIWEASSVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CHAVU (Photosystem Q(B) protein OS=Chara vulgaris GN=psbA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.982e-52
Identity = 96/113 (84.96%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAI+PTSAAIGLHFYPIWEAAS+DEWLYNGGPYE+IVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIVPTSAAIGLHFYPIWEAASLDEWLYNGGPYEMIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA_MARPO1.339e-5286.73Photosystem Q(B) protein OS=Marchantia polymorpha ... [more]
PSBA_DUMHI1.339e-5286.73Photosystem Q(B) protein OS=Dumortiera hirsuta GN=... [more]
PSBA_CONSU1.339e-5286.73Photosystem Q(B) protein OS=Conocephalum supradeco... [more]
PSBA_VICFA1.748e-5286.73Photosystem Q(B) protein OS=Vicia faba GN=psbA PE=... [more]
PSBA_NYMAL1.748e-5285.84Photosystem Q(B) protein OS=Nymphaea alba GN=psbA ... [more]
PSBA_SPIOG2.283e-5286.73Photosystem Q(B) protein OS=Spirodela oligorhiza G... [more]
PSBA_MEDSA2.283e-5286.73Photosystem Q(B) protein OS=Medicago sativa GN=psb... [more]
PSBA_CONCI2.283e-5285.84Photosystem Q(B) protein OS=Conocephalum conicum G... [more]
PSBA_GNEPA2.982e-5285.84Photosystem Q(B) protein OS=Gnetum parvifolium GN=... [more]
PSBA_CHAVU2.982e-5284.96Photosystem Q(B) protein OS=Chara vulgaris GN=psbA... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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