CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_STAPU (Photosystem Q(B) protein OS=Staurastrum punctulatum GN=psbA PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.087e-52
Identity = 96/113 (84.96%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGAI+P+SAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAIVPSSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_AMBTC (Photosystem Q(B) protein OS=Amborella trichopoda GN=psbA PE=3 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 5.087e-52
Identity = 97/113 (85.84%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNI+SGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLL VACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNILSGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLSVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CUSOB (Photosystem Q(B) protein OS=Cuscuta obtusiflora GN=psbA PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 6.644e-52
Identity = 97/113 (85.84%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAAS+ EWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASIAEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAIAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CUSGR (Photosystem Q(B) protein OS=Cuscuta gronovii GN=psbA PE=3 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 6.644e-52
Identity = 97/113 (85.84%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAAS+ EWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASIAEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAIAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CHLAT (Photosystem Q(B) protein OS=Chlorokybus atmophyticus GN=psbA PE=3 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 8.677e-52
Identity = 95/113 (84.07%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAI+PTSAAIGLHFYPIWEAAS+DEWLYNGGPYE+IVLHFLLGV CYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIVPTSAAIGLHFYPIWEAASLDEWLYNGGPYEMIVLHFLLGVCCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_ZYGCR (Photosystem Q(B) protein OS=Zygnema circumcarinatum GN=psbA PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.480e-51
Identity = 95/113 (84.07%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLL+GNNIISGAI+PTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGV CYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLFGNNIISGAIVPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVCCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CHAGL (Photosystem Q(B) protein OS=Chaetosphaeridium globosum GN=psbA PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.933e-51
Identity = 94/113 (83.19%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAI+PTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHF LG+ CYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIVPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFFLGICCYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_OLTVI (Photosystem Q(B) protein OS=Oltmannsiellopsis viridis GN=psbA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.345e-51
Identity = 94/113 (83.19%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGA+IPTS AIGLHFYPIWEAAS+DEWLYNGGPY+LIV HFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAVIPTSNAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_NEPOL (Photosystem Q(B) protein OS=Nephroselmis olivacea GN=psbA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.636e-50
Identity = 94/113 (83.19%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLL+GNNIISGAIIP+SAAIG+HFYPIWEAAS+DEWLYNGG YELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLFGNNIISGAIIPSSAAIGIHFYPIWEAASIDEWLYNGGCYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNJB (Photosystem Q(B) protein 2 OS=Synechococcus sp. GN=psbA2 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.791e-50
Identity = 91/113 (80.53%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGA++P+SAAIGLHFYPIWEAAS+DEWLYNGGPY+LIVLHFL+GV CYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAVVPSSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFLIGVFCYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA_STAPU5.087e-5284.96Photosystem Q(B) protein OS=Staurastrum punctulatu... [more]
PSBA_AMBTC5.087e-5285.84Photosystem Q(B) protein OS=Amborella trichopoda G... [more]
PSBA_CUSOB6.644e-5285.84Photosystem Q(B) protein OS=Cuscuta obtusiflora GN... [more]
PSBA_CUSGR6.644e-5285.84Photosystem Q(B) protein OS=Cuscuta gronovii GN=ps... [more]
PSBA_CHLAT8.677e-5284.07Photosystem Q(B) protein OS=Chlorokybus atmophytic... [more]
PSBA_ZYGCR1.480e-5184.07Photosystem Q(B) protein OS=Zygnema circumcarinatu... [more]
PSBA_CHAGL1.933e-5183.19Photosystem Q(B) protein OS=Chaetosphaeridium glob... [more]
PSBA_OLTVI7.345e-5183.19Photosystem Q(B) protein OS=Oltmannsiellopsis viri... [more]
PSBA_NEPOL1.636e-5083.19Photosystem Q(B) protein OS=Nephroselmis olivacea ... [more]
PSBA2_SYNJB2.791e-5080.53Photosystem Q(B) protein 2 OS=Synechococcus sp. GN... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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