CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PSEAK (Photosystem Q(B) protein OS=Pseudendoclonium akinetum GN=psbA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.761e-50
Identity = 92/113 (81.42%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAIIPTS AIGLHFYPIWEAASVDEWLYNGGPY+LIV HF LG+ CYMGREWELSFRLGMRPWI              F+IYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIIPTSNAIGLHFYPIWEAASVDEWLYNGGPYQLIVCHFFLGICCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFIIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_GRATL (Photosystem Q(B) protein OS=Gracilaria tenuistipitata var. liui GN=psbA PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.218e-50
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGAIIP+SAAIG+HFYPIWEAAS+DEWLYNGGPY+LIVLHFLLGV+CY+GREWELS+RLGMRPWI              FL+YPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAIIPSSAAIGIHFYPIWEAASLDEWLYNGGPYQLIVLHFLLGVSCYIGREWELSYRLGMRPWISVAFTAPVAAAAAVFLVYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA3_SYNJA (Photosystem Q(B) protein 3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=psbA3 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.218e-50
Identity = 90/113 (79.65%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+GA++P+SAAIGLHFYPIWEAAS+DEWLYNGGPY+LIVLHFL+GV CYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIITGAVVPSSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFLIGVFCYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNJA (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.218e-50
Identity = 90/113 (79.65%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+GA++P+SAAIGLHFYPIWEAAS+DEWLYNGGPY+LIVLHFL+GV CYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIITGAVVPSSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFLIGVFCYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PALPL (Photosystem Q(B) protein OS=Palmaria palmata GN=psbA PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.121e-50
Identity = 90/113 (79.65%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGAIIP+SAAIG+HFYPIWEAAS+DEWLYNGGPY+LIVLHFLLGV CY+GREWELS+RLGMRPWI              FL+YPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAIIPSSAAIGIHFYPIWEAASLDEWLYNGGPYQLIVLHFLLGVCCYIGREWELSYRLGMRPWISVAFTAPVAAAAAVFLVYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CYAPA (Photosystem Q(B) protein OS=Cyanophora paradoxa GN=psbA PE=3 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 8.121e-50
Identity = 89/113 (78.76%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL YGNNIISGA+IP+SAAIG+HFYPIWEAAS+DEWLYNGGPY+ +V+HFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLFYGNNIISGAVIPSSAAIGMHFYPIWEAASLDEWLYNGGPYQFVVMHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CHLRE (Photosystem Q(B) protein OS=Chlamydomonas reinhardtii GN=psbA-A PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.061e-49
Identity = 91/113 (80.53%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+GA+IPTS AIGLHFYPIWEAAS+DEWLYNGGPY+LIV HFLLGV CYMGREWELSFRLGMRPWI              FL+YPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIITGAVIPTSNAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFLLGVYCYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFLVYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PORYE (Photosystem Q(B) protein OS=Porphyra yezoensis GN=psbA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.809e-49
Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA+IP+SAAIG+HFYPIWEAAS+DEWLYNGGPY+L+VLHFL GVACY+GREWELS+RLGMRPWI              FL+YPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAVIPSSAAIGIHFYPIWEAASLDEWLYNGGPYQLVVLHFLTGVACYIGREWELSYRLGMRPWISVAFTAPVAAAAAVFLVYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PORPU (Photosystem Q(B) protein OS=Porphyra purpurea GN=psbA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.809e-49
Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA+IP+SAAIG+HFYPIWEAAS+DEWLYNGGPY+L+VLHFL GVACY+GREWELS+RLGMRPWI              FL+YPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAVIPSSAAIGIHFYPIWEAASLDEWLYNGGPYQLVVLHFLTGVACYIGREWELSYRLGMRPWISVAFTAPVAAAAAVFLVYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CHLMO (Photosystem Q(B) protein OS=Chlamydomonas moewusii GN=psbA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.363e-49
Identity = 89/113 (78.76%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGA+IPTS AIGLHFYPIWEAAS+DEWLYNGGPY+LIV HF +G+ CYMGREWELSFRLGMRPWI              F+IYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAVIPTSNAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFFIGICCYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFIIYPIGQGSFSDGMPLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA_PSEAK4.761e-5081.42Photosystem Q(B) protein OS=Pseudendoclonium akine... [more]
PSBA_GRATL6.218e-5079.65Photosystem Q(B) protein OS=Gracilaria tenuistipit... [more]
PSBA3_SYNJA6.218e-5079.65Photosystem Q(B) protein 3 OS=Synechococcus sp. (s... [more]
PSBA1_SYNJA6.218e-5079.65Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA_PALPL8.121e-5079.65Photosystem Q(B) protein OS=Palmaria palmata GN=ps... [more]
PSBA_CYAPA8.121e-5078.76Photosystem Q(B) protein OS=Cyanophora paradoxa GN... [more]
PSBA_CHLRE1.061e-4980.53Photosystem Q(B) protein OS=Chlamydomonas reinhard... [more]
PSBA_PORYE1.809e-4977.88Photosystem Q(B) protein OS=Porphyra yezoensis GN=... [more]
PSBA_PORPU1.809e-4977.88Photosystem Q(B) protein OS=Porphyra purpurea GN=p... [more]
PSBA_CHLMO2.363e-4978.76Photosystem Q(B) protein OS=Chlamydomonas moewusii... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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