CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_LEPTE (Photosystem Q(B) protein OS=Leptosira terrestris GN=psbA PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 88/113 (77.88%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGA++PTS AIGLHFYPIWEAAS+DEWLYNGGPY+LIV HF LG+  YMGREWELSFRLGMRPWI              F+IYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAVVPTSNAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFFLGICAYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFIIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_ECTSI (Photosystem Q(B) protein OS=Ectocarpus siliculosus GN=psbA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 86/113 (76.11%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA+IP+S AIG+HFYPIWEAAS++EWLYNGGPY+LIV HFL+GVAC+MGREWELS+RLGMRPWI              FL+YPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_BIGNA (Photosystem Q(B) protein OS=Bigelowiella natans GN=psbA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 89/113 (78.76%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNIISGAI+PTS AIGLHFYPIWEAASVDEWLYNGGPY++IV HF +GV  YMGREWELSFRLGMRPWI              F+IYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIISGAIVPTSNAIGLHFYPIWEAASVDEWLYNGGPYQMIVCHFFIGVCSYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFIIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNP6 (Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFL+GV CYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLMYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGVFCYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNP2 (Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 85/113 (75.22%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNI+SGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L++ HFL+GV CYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIVSGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGVFCYMGREWELSYRLGMRPWICVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNE7 (Photosystem Q(B) protein 2 OS=Synechococcus elongatus (strain PCC 7942) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFL+GV CYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLMYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGVFCYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_THEEB (Photosystem Q(B) protein 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=psbA1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+GA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+LI+ HFLLG +CYMGR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNP6 (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFL+GV CYMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLMYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGVFCYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNEN (Photosystem Q(B) protein 1 OS=Synechococcus elongatus naegeli GN=psbA1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+GA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+LI+ HFLLG +CYMGR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_OSTTA (Photosystem Q(B) protein OS=Ostreococcus tauri GN=psbA1 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.412e-48
Identity = 88/113 (77.88%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSL+YGNNIISGA+IPTS AIGLHFYPIWEAAS+DEWLYNGGPY+LIV HF +G+  YMGREWELSFRLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVSGSLMYGNNIISGAVIPTSNAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFFIGICSYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA_LEPTE2.000e-4877.88Photosystem Q(B) protein OS=Leptosira terrestris G... [more]
PSBA_ECTSI2.000e-4876.11Photosystem Q(B) protein OS=Ectocarpus siliculosus... [more]
PSBA_BIGNA2.000e-4878.76Photosystem Q(B) protein OS=Bigelowiella natans GN... [more]
PSBA2_SYNP62.000e-4876.11Photosystem Q(B) protein 2 OS=Synechococcus sp. (s... [more]
PSBA2_SYNP22.000e-4875.22Photosystem Q(B) protein 2 OS=Synechococcus sp. (s... [more]
PSBA2_SYNE72.000e-4876.11Photosystem Q(B) protein 2 OS=Synechococcus elonga... [more]
PSBA1_THEEB2.000e-4876.11Photosystem Q(B) protein 1 OS=Thermosynechococcus ... [more]
PSBA1_SYNP62.000e-4876.11Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA1_SYNEN2.000e-4876.11Photosystem Q(B) protein 1 OS=Synechococcus elonga... [more]
PSBA_OSTTA3.412e-4877.88Photosystem Q(B) protein OS=Ostreococcus tauri GN=... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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