CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNY3 (Photosystem Q(B) protein 2 OS=Synechocystis sp. (strain PCC 6803) GN=psbA2 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.412e-48
Identity = 85/113 (75.22%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFL+G+ CYMGR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGIFCYMGRQWELSYRLGMRPWICVAYSAPVSAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROHO (Photosystem Q(B) protein OS=Prochlorothrix hollandica GN=psbA1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.456e-48
Identity = 84/113 (74.34%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFL+G+ CYMGREWELS+RLGMRPWI              FLIYP+GQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLMYGNNIISGAVVPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGIFCYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPLGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_HETCA (Photosystem Q(B) protein OS=Heterosigma carterae GN=psbA PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.456e-48
Identity = 87/113 (76.99%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNII+GA+IP+S AIG+HFYPIWEAAS+DEWLYNGGPY+LIVLHFLLGVA YMGREWELS+RLGMRPWI              FL+YPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLMYGNNIITGAVIPSSNAIGVHFYPIWEAASLDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_FREDI (Photosystem Q(B) protein OS=Fremyella diplosiphon GN=psbA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.820e-48
Identity = 84/113 (74.34%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L++ HFLLG ACY+GR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLLGCACYLGRQWELSYRLGMRPWICVAYSAPLASATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_CYAA5 (Photosystem Q(B) protein OS=Cyanothece sp. (strain ATCC 51142) GN=psbA1 PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 5.820e-48
Identity = 83/113 (73.45%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNI+SGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L++ HFL+G+ CYMGR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIVSGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGIFCYMGRQWELSYRLGMRPWICVAYSAPVSAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_GLOVI (Photosystem Q(B) protein 1 OS=Gloeobacter violaceus GN=psbA1 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.820e-48
Identity = 85/113 (75.22%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EP+SGSLLYGNNII+GA+IP+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFL+GV CY+GREWELS+RLG+RPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPISGSLLYGNNIITGAVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGVFCYLGREWELSYRLGLRPWICIAYSAPVAAAAAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA3_GLOVI (Photosystem Q(B) protein 3 OS=Gloeobacter violaceus GN=psbA4 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.601e-48
Identity = 84/113 (74.34%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EP+SGSLLYGNNII+GA+IP+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFL+GV CY+GREWELS+RLG+RPWI              FL+YPIGQGSFSDGMPLGIS
Sbjct:   65 EPISGSLLYGNNIITGAVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGVFCYLGREWELSYRLGLRPWICIAYSAPVAAATAVFLVYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA3_ANAVT (Photosystem Q(B) protein 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psbA3 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.601e-48
Identity = 84/113 (74.34%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFL+G ACY+GR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGCACYLGRQWELSYRLGMRPWICVAYSAPLASATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNPW (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain WH7803) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 9.928e-48
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFL+G+ CYMGREWELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGIFCYMGREWELSYRLGMRPWICVAYSAPVAAASAVFLVYPFGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_ANASP (Photosystem Q(B) protein 1 OS=Anabaena sp. (strain PCC 7120) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 9.928e-48
Identity = 83/113 (73.45%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L++ HFL+G ACY+GR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGCACYLGRQWELSYRLGMRPWICVAYSAPLASATAVFLIYPIGQGSFSDGMPLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA2_SYNY33.412e-4875.22Photosystem Q(B) protein 2 OS=Synechocystis sp. (s... [more]
PSBA_PROHO4.456e-4874.34Photosystem Q(B) protein OS=Prochlorothrix holland... [more]
PSBA_HETCA4.456e-4876.99Photosystem Q(B) protein OS=Heterosigma carterae G... [more]
PSBA_FREDI5.820e-4874.34Photosystem Q(B) protein OS=Fremyella diplosiphon ... [more]
PSBA_CYAA55.820e-4873.45Photosystem Q(B) protein OS=Cyanothece sp. (strain... [more]
PSBA1_GLOVI5.820e-4875.22Photosystem Q(B) protein 1 OS=Gloeobacter violaceu... [more]
PSBA3_GLOVI7.601e-4874.34Photosystem Q(B) protein 3 OS=Gloeobacter violaceu... [more]
PSBA3_ANAVT7.601e-4874.34Photosystem Q(B) protein 3 OS=Anabaena variabilis ... [more]
PSBA1_SYNPW9.928e-4873.45Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA1_ANASP9.928e-4873.45Photosystem Q(B) protein 1 OS=Anabaena sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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