CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_ANAVT (Photosystem Q(B) protein 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.297e-47
Identity = 84/113 (74.34%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L++ HFL GV CY+GREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLTGVFCYLGREWELSYRLGMRPWICLAFSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_ANASP (Photosystem Q(B) protein 2 OS=Anabaena sp. (strain PCC 7120) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.297e-47
Identity = 84/113 (74.34%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L++ HFL GV CY+GREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLTGVFCYLGREWELSYRLGMRPWICLAFSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_SYNY4 (Photosystem Q(B) protein OS=Synechocystis sp. (strain PCC 6714) GN=psbA PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.889e-47
Identity = 84/113 (74.34%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V  FL+G+ CYMGR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFQFLIGIFCYMGRQWELSYRLGMRPWICVAYSAPVSARTAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROMM (Photosystem Q(B) protein OS=Prochlorococcus marinus (strain MIT 9313) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.889e-47
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS LYGNNIISGA++P+S AIGLHFYPIWEAASVDEWLYNGGPY+L+V HFL+G+ C++GR+WELS+RLGMRPWI              FLIYP+GQGSFSDGMPLGIS
Sbjct:   64 EPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAASVDEWLYNGGPYQLVVFHFLIGICCWLGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIYPVGQGSFSDGMPLGIS 176
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROM3 (Photosystem Q(B) protein OS=Prochlorococcus marinus (strain MIT 9303) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.889e-47
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS LYGNNIISGA++P+S AIGLHFYPIWEAASVDEWLYNGGPY+L+V HFL+G+ C++GR+WELS+RLGMRPWI              FLIYP+GQGSFSDGMPLGIS
Sbjct:   64 EPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAASVDEWLYNGGPYQLVVFHFLIGICCWLGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIYPVGQGSFSDGMPLGIS 176
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNPW (Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain WH7803) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.098e-46
Identity = 81/113 (71.68%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   64 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLVYPFGQGSFSDGMPLGIS 176
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_TRIEI (Photosystem Q(B) protein 2 OS=Trichodesmium erythraeum (strain IMS101) GN=psbA3 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.434e-46
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL++GNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L++ HFL+G+  YMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLMFGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGIFTYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_TRIEI (Photosystem Q(B) protein 1 OS=Trichodesmium erythraeum (strain IMS101) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.434e-46
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL++GNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L++ HFL+G+  YMGREWELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLMFGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGIFTYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_EUGGR (Photosystem Q(B) protein OS=Euglena gracilis GN=psbA PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 1.872e-46
Identity = 82/113 (72.57%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSL YGNNII+GA++PTS AIGLHFYPIWEA S+DEWLYNGGPY+LIV HF +G+  YMGREWELSFRLGMRPWI              F++YP+GQGSFSDGMPLGIS
Sbjct:   66 EPVSGSLFYGNNIITGAVVPTSNAIGLHFYPIWEATSLDEWLYNGGPYQLIVCHFFIGICSYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFIVYPLGQGSFSDGMPLGIS 178
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROMS (Photosystem Q(B) protein OS=Prochlorococcus marinus (strain AS9601) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.445e-46
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS LYGNNIISGA++P+S AIGLHFYPIWEAA+VDEWLYNGGPY+L++ HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   66 EPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAATVDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGIS 178
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA2_ANAVT1.297e-4774.34Photosystem Q(B) protein 2 OS=Anabaena variabilis ... [more]
PSBA2_ANASP1.297e-4774.34Photosystem Q(B) protein 2 OS=Anabaena sp. (strain... [more]
PSBA_SYNY42.889e-4774.34Photosystem Q(B) protein OS=Synechocystis sp. (str... [more]
PSBA_PROMM2.889e-4772.57Photosystem Q(B) protein OS=Prochlorococcus marinu... [more]
PSBA_PROM32.889e-4772.57Photosystem Q(B) protein OS=Prochlorococcus marinu... [more]
PSBA2_SYNPW1.098e-4671.68Photosystem Q(B) protein 2 OS=Synechococcus sp. (s... [more]
PSBA2_TRIEI1.434e-4672.57Photosystem Q(B) protein 2 OS=Trichodesmium erythr... [more]
PSBA1_TRIEI1.434e-4672.57Photosystem Q(B) protein 1 OS=Trichodesmium erythr... [more]
PSBA_EUGGR1.872e-4672.57Photosystem Q(B) protein OS=Euglena gracilis GN=ps... [more]
PSBA_PROMS2.445e-4670.80Photosystem Q(B) protein OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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