CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROMP (Photosystem Q(B) protein OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=psbA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.445e-46
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS LYGNNIISGA++P+S AIGLHFYPIWEAA+VDEWLYNGGPY+L++ HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   66 EPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAATVDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGIS 178
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROM9 (Photosystem Q(B) protein OS=Prochlorococcus marinus (strain MIT 9312) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.445e-46
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS LYGNNIISGA++P+S AIGLHFYPIWEAA+VDEWLYNGGPY+L++ HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   66 EPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAATVDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGIS 178
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROM5 (Photosystem Q(B) protein OS=Prochlorococcus marinus (strain MIT 9515) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.445e-46
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS LYGNNIISGA++P+S AIGLHFYPIWEAA+VDEWLYNGGPY+L++ HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   66 EPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAATVDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGIS 178
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROM2 (Photosystem Q(B) protein OS=Prochlorococcus marinus (strain MIT 9215) GN=psbA PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 2.445e-46
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS LYGNNIISGA++P+S AIGLHFYPIWEAA+VDEWLYNGGPY+L++ HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   66 EPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAATVDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGIS 178
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROM0 (Photosystem Q(B) protein OS=Prochlorococcus marinus (strain MIT 9301) GN=psbA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.445e-46
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS LYGNNIISGA++P+S AIGLHFYPIWEAA+VDEWLYNGGPY+L++ HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   66 EPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAATVDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGIS 178
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNR3 (Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain RCC307) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.445e-46
Identity = 82/113 (72.57%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS LYGNNIISGA+IP+S AIGLHFYPIWEAA++DEWLYNGGPY+L+V HFL+G++ YMGR+WELS+RLGMRPWI              FLIYP GQGSFSDGMPLGIS
Sbjct:   64 EPVAGSFLYGNNIISGAVIPSSNAIGLHFYPIWEAATLDEWLYNGGPYQLVVFHFLIGISAYMGRQWELSYRLGMRPWICVAYAAPLSAAMVVFLIYPFGQGSFSDGMPLGIS 176
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNSC (Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain CC9605) GN=psbA3 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.194e-46
Identity = 81/113 (71.68%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA+IP+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+  HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   64 EPVAGSLIYGNNIISGAVIPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVCFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPLSAAMAVFLVYPFGQGSFSDGMPLGIS 176
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNPX (Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain WH8102) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.171e-46
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+  HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   64 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVCFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPLSAAMAVFLVYPFGQGSFSDGMPLGIS 176
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_EMIHU (Photosystem Q(B) protein OS=Emiliania huxleyi GN=psbA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.448e-46
Identity = 82/113 (72.57%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA++P+S AIG+HFYPIWEAAS+DEWLYNGG Y+L+VLHF +GV  Y+GREWELS+RLGMRPWI              F+IYPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAVVPSSNAIGVHFYPIWEAASIDEWLYNGGTYQLVVLHFFIGVCAYIGREWELSYRLGMRPWICVAFSAPVAAAAAVFVIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_GALSU (Photosystem Q(B) protein OS=Galdieria sulphuraria GN=psbA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.115e-46
Identity = 84/113 (74.34%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EP   SLLYGNNII+GAI+PTS AIG+HFYPIWEAAS+DEWLYNGGPYELIVLHF +G+  YMGREWELS+RLGMRPWI              F+IYPIGQGSFSDGMPLGIS
Sbjct:   65 EPGFRSLLYGNNIITGAIVPTSNAIGIHFYPIWEAASLDEWLYNGGPYELIVLHFFIGICAYMGREWELSYRLGMRPWIAVAFSAPVAAATAVFIIYPIGQGSFSDGMPLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA_PROMP2.445e-4670.80Photosystem Q(B) protein OS=Prochlorococcus marinu... [more]
PSBA_PROM92.445e-4670.80Photosystem Q(B) protein OS=Prochlorococcus marinu... [more]
PSBA_PROM52.445e-4670.80Photosystem Q(B) protein OS=Prochlorococcus marinu... [more]
PSBA_PROM22.445e-4670.80Photosystem Q(B) protein OS=Prochlorococcus marinu... [more]
PSBA_PROM02.445e-4670.80Photosystem Q(B) protein OS=Prochlorococcus marinu... [more]
PSBA2_SYNR32.445e-4672.57Photosystem Q(B) protein 2 OS=Synechococcus sp. (s... [more]
PSBA2_SYNSC3.194e-4671.68Photosystem Q(B) protein 2 OS=Synechococcus sp. (s... [more]
PSBA2_SYNPX4.171e-4670.80Photosystem Q(B) protein 2 OS=Synechococcus sp. (s... [more]
PSBA_EMIHU5.448e-4672.57Photosystem Q(B) protein OS=Emiliania huxleyi GN=p... [more]
PSBA_GALSU7.115e-4674.34Photosystem Q(B) protein OS=Galdieria sulphuraria ... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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