CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROMT (Photosystem Q(B) protein OS=Prochlorococcus marinus (strain NATL2A) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.292e-46
Identity = 78/113 (69.03%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS +YGNNIISGA++P+S AIGLHFYPIWEAA++DEWLYNGGPY+L++ HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   66 EPVAGSFMYGNNIISGAVVPSSNAIGLHFYPIWEAATLDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGIS 178
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROM1 (Photosystem Q(B) protein OS=Prochlorococcus marinus (strain NATL1A) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.292e-46
Identity = 78/113 (69.03%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS +YGNNIISGA++P+S AIGLHFYPIWEAA++DEWLYNGGPY+L++ HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   66 EPVAGSFMYGNNIISGAVVPSSNAIGLHFYPIWEAATLDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGIS 178
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_RHDSA (Photosystem Q(B) protein OS=Rhodomonas salina GN=psbA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.214e-45
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNII+GA+IP+SA+IG+HFYPIWEAAS+DEWLYNGGPY+LIV HFLLGV  ++GREWE S+RLGMRPWI              FL+YPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIITGAVIPSSASIGIHFYPIWEAASLDEWLYNGGPYQLIVDHFLLGVCGWIGREWEFSYRLGMRPWISVAFTAPVAAASAVFLVYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_GUITH (Photosystem Q(B) protein OS=Guillardia theta GN=psbA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.214e-45
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNII+GA+IP+SA+IG+HFYPIWEAAS+DEWLYNGGPY+LIV HFLLGV  ++GREWE S+RLGMRPWI              FL+YPIGQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIITGAVIPSSASIGIHFYPIWEAASLDEWLYNGGPYQLIVDHFLLGVCGWIGREWEFSYRLGMRPWISVAFTAPVAAASAVFLVYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA3_SYNS3 (Photosystem Q(B) protein 3 OS=Synechococcus sp. (strain CC9311) GN=psbA3 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.214e-45
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA++P+S AIGLHFYPIW+AAS+DEWLYNGG Y+L+V HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   64 EPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWDAASLDEWLYNGGTYQLVVFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPLSAAMAVFLVYPFGQGSFSDGMPLGIS 176
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNR3 (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain RCC307) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.214e-45
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGP++L++ HFL+G+  YMGREWELS+RLGMRPWI              FL+YP GQGSFSD MPLGIS
Sbjct:   65 EPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVIFHFLIGIYAYMGREWELSYRLGMRPWICIAYSAPVAAASAVFLVYPFGQGSFSDAMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA3_SYNPX (Photosystem Q(B) protein 3 OS=Synechococcus sp. (strain WH8102) GN=psbA3 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.585e-45
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGP++L+V HFL+G+  YMGREWELS+RLGMRPWI              FL+YP GQGSFSD MPLGIS
Sbjct:   65 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVVFHFLIGIYAYMGREWELSYRLGMRPWICVAYSAPVAAASAVFLVYPFGQGSFSDAMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNS9 (Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain CC9902) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.585e-45
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGP++L+V HFL+G+  YMGREWELS+RLGMRPWI              FL+YP GQGSFSD MPLGIS
Sbjct:   65 EPVAGSLMYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVVFHFLIGIYAYMGREWELSYRLGMRPWICVAYSAPVAAASAVFLVYPFGQGSFSDAMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_SYNS3 (Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain CC9311) GN=psbA2 PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 1.585e-45
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGP++L+V HFL+G+  YMGREWELS+RLGMRPWI              FL+YP GQGSFSD MPLGIS
Sbjct:   65 EPVAGSLMYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVVFHFLIGIYAYMGREWELSYRLGMRPWICVAYSAPVAAASAVFLVYPFGQGSFSDAMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNSC (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain CC9605) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.585e-45
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGP++L+V HFL+G+  YMGREWELS+RLGMRPWI              FL+YP GQGSFSD MPLGIS
Sbjct:   65 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVVFHFLIGIYAYMGREWELSYRLGMRPWICVAYSAPVAAASAVFLVYPFGQGSFSDAMPLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA_PROMT9.292e-4669.03Photosystem Q(B) protein OS=Prochlorococcus marinu... [more]
PSBA_PROM19.292e-4669.03Photosystem Q(B) protein OS=Prochlorococcus marinu... [more]
PSBA_RHDSA1.214e-4573.45Photosystem Q(B) protein OS=Rhodomonas salina GN=p... [more]
PSBA_GUITH1.214e-4573.45Photosystem Q(B) protein OS=Guillardia theta GN=ps... [more]
PSBA3_SYNS31.214e-4570.80Photosystem Q(B) protein 3 OS=Synechococcus sp. (s... [more]
PSBA1_SYNR31.214e-4570.80Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA3_SYNPX1.585e-4570.80Photosystem Q(B) protein 3 OS=Synechococcus sp. (s... [more]
PSBA2_SYNS91.585e-4570.80Photosystem Q(B) protein 2 OS=Synechococcus sp. (s... [more]
PSBA2_SYNS31.585e-4570.80Photosystem Q(B) protein 2 OS=Synechococcus sp. (s... [more]
PSBA1_SYNSC1.585e-4570.80Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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