CB322093

Overview
NameCB322093
Unique NameCB322093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNS9 (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain CC9902) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.585e-45
Identity = 79/113 (69.91%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGP++L+V HFL+G++ YMGR+WELS+RLGMRPWI              FL+YP GQGSFSD MPLGIS
Sbjct:   64 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVVFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLVYPFGQGSFSDAMPLGIS 176
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNS3 (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain CC9311) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.585e-45
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGP++L+V HFL+G+  YMGREWELS+RLGMRPWI              FL+YP GQGSFSD MPLGIS
Sbjct:   65 EPVAGSLMYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVVFHFLIGIYAYMGREWELSYRLGMRPWICVAYSAPVAAASAVFLVYPFGQGSFSDAMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNPX (Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain WH8102) GN=psbA1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.585e-45
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSL+YGNNIISGA++P+S AIGLHFYPIWEAAS+DEWLYNGGP++L+V HFL+G+  YMGREWELS+RLGMRPWI              FL+YP GQGSFSD MPLGIS
Sbjct:   65 EPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPFQLVVFHFLIGIYAYMGREWELSYRLGMRPWICVAYSAPVAAASAVFLVYPFGQGSFSDAMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_MASLA (Photosystem Q(B) protein OS=Mastigocladus laminosus GN=psbA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.070e-45
Identity = 83/113 (73.45%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+GA++PTS AIGLHFYPIWEA  +DEWLYNGGPYELIV HFL+G+ C++GR+WELS+RLGMRPWI              FLIYPIGQGSFSDGMPLGI+
Sbjct:   65 EPVSGSLLYGNNIITGAVVPTSNAIGLHFYPIWEA--LDEWLYNGGPYELIVFHFLIGIFCWLGRQWELSYRLGMRPWICVAYSAPVAAATSVFLIYPIGQGSFSDGMPLGIT 175
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_GLOVI (Photosystem Q(B) protein 2 OS=Gloeobacter violaceus GN=psbA2 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.612e-45
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EP+SGSLLYGNNII+GA+IP+S AIGLHFYPIWEAAS+DEWLYNGGPY+L+V HFL+G+  Y+GREWE S+RLG+RPWI              FLIYP+GQGSFSDGM LGIS
Sbjct:   65 EPISGSLLYGNNIITGAVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGIFAYLGREWEFSYRLGLRPWICVAYSAPVAAATAVFLIYPMGQGSFSDGMSLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_ACAM1 (Photosystem Q(B) protein 2 OS=Acaryochloris marina (strain MBIC 11017) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.612e-45
Identity = 78/113 (69.03%), Postives = 93/113 (82.30%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GSLLYGNNII+GA++P+S AIGLH YPIWEAAS+DEWLYNGGPY+LI+ H+++G  CY+GR+WE S+RLGMRPWI              FLIYP+GQGSFSDGMPLGIS
Sbjct:   65 EPVAGSLLYGNNIITGAVVPSSNAIGLHLYPIWEAASLDEWLYNGGPYQLIIFHYMIGCICYLGRQWEYSYRLGMRPWICVAYSAPLAATYSVFLIYPLGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_PROMA (Photosystem Q(B) protein OS=Prochlorococcus marinus GN=psbA PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 6.023e-45
Identity = 78/113 (69.03%), Postives = 93/113 (82.30%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV+GS LYGNNIISGA++P+S AIGLHFYPIWEAA++DEWLYNGGPY+L++ HFL+G+  +MGR+WELS+RLGMRPWI              FL+YP GQGSFSDGMPLGIS
Sbjct:   66 EPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAATLDEWLYNGGPYQLVIFHFLIGICGWMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGIS 178
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA1_SYNJB (Photosystem Q(B) protein 1 OS=Synechococcus sp. GN=psbA1 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.023e-45
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPV GSL+ GNN+IS A++PTSAAIGLHFYPIWEAAS+DEWLYNGGPY+LIVLHFL+GV CY+GR+WELS+RLGMRPWI               L+YPIGQGSFS+G+PLGI+
Sbjct:   68 EPVIGSLIGGNNLISAAVVPTSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAVLLVYPIGQGSFSEGLPLGIA 180
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA_GYMMI (Photosystem Q(B) protein OS=Gymnodinium mikimotoi GN=psbA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.027e-44
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLY NNIISGA+IP+S A+G+HFYPIWEAAS+DEWLYNGG Y+L+V HF +GV  Y+GREWELS+RLGMRPWI              F++YPIGQGSFSDGMPLGIS
Sbjct:   68 EPVSGSLLYANNIISGAVIPSSNAMGVHFYPIWEAASLDEWLYNGGTYQLVVFHFFIGVCSYLGREWELSYRLGMRPWIFVAFSAPVAAASAVFIVYPIGQGSFSDGMPLGIS 180
[Close]
BLAST of CB322093 vs. ExPASy Swiss-Prot
Match: PSBA2_THEEB (Photosystem Q(B) protein 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=psbA2 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.027e-44
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:    3 EPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGMPLGIS 341
            EPVSGSLLYGNNII+ A++P+S AIGLH YPIW+AAS+DEWLYNGGPY+LI+ HFL+G+ CYMGREWELS+RLGMRPWI               LIYPIGQGSFSDG+ LGIS
Sbjct:   65 EPVSGSLLYGNNIITAAVVPSSNAIGLHLYPIWDAASLDEWLYNGGPYQLIIFHFLIGIFCYMGREWELSYRLGMRPWIPVAFSAPVAAATAVLLIYPIGQGSFSDGLMLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA1_SYNS91.585e-4569.91Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA1_SYNS31.585e-4570.80Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA1_SYNPX1.585e-4570.80Photosystem Q(B) protein 1 OS=Synechococcus sp. (s... [more]
PSBA_MASLA2.070e-4573.45Photosystem Q(B) protein OS=Mastigocladus laminosu... [more]
PSBA2_GLOVI4.612e-4570.80Photosystem Q(B) protein 2 OS=Gloeobacter violaceu... [more]
PSBA2_ACAM14.612e-4569.03Photosystem Q(B) protein 2 OS=Acaryochloris marina... [more]
PSBA_PROMA6.023e-4569.03Photosystem Q(B) protein OS=Prochlorococcus marinu... [more]
PSBA1_SYNJB6.023e-4570.80Photosystem Q(B) protein 1 OS=Synechococcus sp. GN... [more]
PSBA_GYMMI1.027e-4470.80Photosystem Q(B) protein OS=Gymnodinium mikimotoi ... [more]
PSBA2_THEEB1.027e-4470.80Photosystem Q(B) protein 2 OS=Thermosynechococcus ... [more]

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Properties
Property NameValue
Genbank descriptionEST0201 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB017 similar to photosystem II protein D1 (acc# AAM12551), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322093 ID=CB322093; Name=CB322093; organism=Citrus sinensis; type=EST; length=343bp
GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGT
GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATG
GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG
TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA
TTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCG
GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGG
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