CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_DEHE1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides ethenogenes (strain 195) GN=dxs PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.655e-41
Identity = 90/196 (45.92%), Postives = 122/196 (62.24%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            +A++G  P   IYS+FLQR +DQ++HDV LQKLPV FA+DR G+VG DG TH G FD++FMS +P+M+V APSDE +L H++ T AV   +P   R+PRG G G       +  P  IG+  +L  G  +AI   G  V     A  +L    I  T+ + R+  PLDT+LI ++A  H+ LITVEE  + GG GS
Sbjct:  387 MATQGYIPVVVIYSTFLQRSFDQIIHDVCLQKLPVVFAIDRGGIVGDDGKTHQGIFDLSFMSLIPDMIVTAPSDENDLQHLLYT-AVNSGKPFALRYPRGFGEGVETEGTLRNIP--IGENEVLASGSEIAIFATGKSVAFAKEAMEILAESGIKPTLVNNRYISPLDTELILKIAGNHKYLITVEENVLSGGLGS 579          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_PARD8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=dxs PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.261e-40
Identity = 83/196 (42.35%), Postives = 124/196 (63.27%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA EG+ PFC +YSSF+QR YD V+HDV LQKL +   +DRAGLVG DG TH G FD+ ++  +PN+V+ +P +E +L +++ T     D P   R+PRG   G +    N+   L IGKG+ L +GD +A+L  G +  + + A  M+K + +S+   D  + KPLD +L+ ++  ++  +ITVE G + GGFGS
Sbjct:  387 LAKEGMIPFCNVYSSFMQRAYDMVIHDVALQKLHMVICLDRAGLVGEDGATHHGVFDLAYLRPIPNLVIASPLNELDLRNLMYTGYAAFDGPFVIRYPRGK--GEMKDWRNEMQVLPIGKGKKLRDGDDIAVLSIGPIGNEVIKAIEMVKEERVSIAHYDMIYLKPLDEELLHEIGQKYNRIITVENGVIKGGFGS 580          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BLOFL (1-deoxy-D-xylulose-5-phosphate synthase OS=Blochmannia floridanus GN=dxs PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.261e-40
Identity = 88/199 (44.22%), Postives = 124/199 (62.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPL---EIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGS 585
            LA  G KP  AIYS+FLQR YDQ++HD+ +QKLPV FA+DR G+VG+DG TH GAFD++++ C+PN+++M PS+  E   M+ T       PS  R+P+G     +L P N  T L    + KG I  +G  +AIL +G++++     A  L     + T+ D RF KPLD  LI++L   H+  IT+EE S +GG GS
Sbjct:  370 LAIAGYKPVVAIYSTFLQRAYDQIIHDIAIQKLPVLFAVDRGGIVGSDGETHQGAFDLSYLRCIPNLIIMTPSNAYECKLMLHTGYHYQYGPSVVRYPKGCATNNILYPYNNTTSLYSIPLSKGIIHHQGQHIAILNFGTLLKPAYNVALQL-----NATLVDMRFVKPLDEMLIKKLTENHQAFITLEENSIIGGAGS 563          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ALCBS (1-deoxy-D-xylulose-5-phosphate synthase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=dxs PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.647e-40
Identity = 94/196 (47.96%), Postives = 126/196 (64.29%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGS 585
            LA E  KP  AIYS+FLQRGYDQ++HDV LQ+L V F +DRAGLVG DG TH G FD+ ++  +PNM++ APSDE E   ++  +A   + P+  R+PRG G GA +      T L IG+ R L EG +VAIL +G++V   + AA  L     + TV D R+ KPLD D I + A +H +L+TVE+   +GG GS
Sbjct:  394 LACENQKPVVAIYSTFLQRGYDQLIHDVALQELDVTFGLDRAGLVGEDGATHGGVFDLAYLRTVPNMIIAAPSDENECRQLL-YSAYQHEGPAAVRYPRGTGPGATI--EQTMTALPIGQSRTLREGLQVAILAFGAMVPAALEAAIPL-----NATVIDMRWVKPLDRDAILRAAAQHTLLVTVEDHQQMGGAGS 581          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_SACD2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dxs PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.809e-40
Identity = 88/192 (45.83%), Postives = 121/192 (63.02%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGG 576
            LA E  KP  AIYS+FLQR YDQ+VHDV LQ L V FA+DRAGLVG DGPTH GAFDI+F+ C+P +++  PSDE E   ++  +A      +  R+PRG G GAV+   N+  P  IGKGR L +G  V  + +G ++   +  A     +  +  V D R+ KPLD DL+  +A +++ L+T+EE +V G
Sbjct:  395 LACEKFKPVVAIYSTFLQRAYDQLVHDVALQNLDVTFAIDRAGLVGEDGPTHAGAFDISFLRCIPKIIIATPSDENECRQLL-FSAYHHPGAAAVRYPRGTGPGAVIELENQHWP--IGKGRELRQGKTVCFINFGVLLPDAIAVA-----EANNYGVCDMRWAKPLDKDLLLNMAEQYDYLVTLEENAVAG 578          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=dxs PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.792e-40
Identity = 87/196 (44.39%), Postives = 128/196 (65.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFG 582
            +A+EG+KPF A+YS+FLQR YDQV+HDV +QKLPV   +DRAGLVG DG TH G FDI+F+S +PNM ++AP    E M ++   A   + P   R+PRG  I   L P +K   +E GK   + EGD++AI+  G +VQ  ++AA  +K + +I + + +A F KP+D +L+  L+ +   ++T+E+    GGFG
Sbjct:  375 MAAEGLKPFFAVYSTFLQRAYDQVLHDVCIQKLPVTLCLDRAGLVGEDGETHQGIFDISFLSPMPNMTIVAPKCIDE-MEVILKWASNFNAPLAIRYPRGGDIDVNLKPLSK---IEYGKWEKVQEGDKIAIVATGKMVQHAMIAAQKIKEEKNIDILIINATFIKPIDKELLNSLSKDGFKIVTIEDNIKKGGFG 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CLOPE (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium perfringens GN=dxs PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.394e-39
Identity = 86/196 (43.88%), Postives = 128/196 (65.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFG 582
            +A+EG+KPF A+YS+FLQR YDQV+HDV +QKLPV   +DRAGLVG DG TH G FDI+F+S +PNM ++AP    E M ++   A   + P   R+PRG  I   L P +K   +E GK   + EG+++AI+  G +VQ  ++AA  +K + +I + + +A F KP+D +L+  L+ +   ++T+E+    GGFG
Sbjct:  375 MAAEGLKPFFAVYSTFLQRAYDQVLHDVCIQKLPVTLCLDRAGLVGEDGETHQGIFDISFLSPMPNMTIVAPKCIDE-MEVILKWASNFNAPLAIRYPRGGDIDVNLKPLSK---IEYGKWEKVQEGEKIAIVATGKMVQHAMIAAQKIKEEKNIDILIINATFIKPIDKELLNSLSKDGFKIVTIEDNIKKGGFG 566          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_LISMF (1-deoxy-D-xylulose-5-phosphate synthase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dxs PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.378e-39
Identity = 87/196 (44.39%), Postives = 123/196 (62.76%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA++G+KPF  IYS+FLQR YDQ+VHDV  QKL V   +DRAGLVGADG TH G FDI+F++ +PNM +  P DE E   ++ TA   +D P   R+PRG   GA +  +N  T + IGK   +++     IL +G  ++  + AA  L+ +   V V +AR+ KPLD  L+ Q+  +   ++TVEE  + GGFG+
Sbjct:  352 LATQGMKPFLTIYSTFLQRAYDQLVHDVCRQKLNVVIGIDRAGLVGADGETHQGIFDISFLNSIPNMTISMPKDEVEARQLMDTAFSYNDGPFAIRYPRGEAPGAQVAESN--TLIPIGKWETIIQPIDAVILTFGPTIRLALKAAEQLELEGYHVGVINARYIKPLDEALLHQILKQKIPILTVEESLLKGGFGA 545          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_LISMC (1-deoxy-D-xylulose-5-phosphate synthase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=dxs PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.378e-39
Identity = 87/196 (44.39%), Postives = 123/196 (62.76%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGS 585
            LA++G+KPF  IYS+FLQR YDQ+VHDV  QKL V   +DRAGLVGADG TH G FDI+F++ +PNM +  P DE E   ++ TA   +D P   R+PRG   GA +  +N  T + IGK   +++     IL +G  ++  + AA  L+ +   V V +AR+ KPLD  L+ Q+  +   ++TVEE  + GGFG+
Sbjct:  352 LATQGMKPFLTIYSTFLQRAYDQLVHDVCRQKLNVVIGIDRAGLVGADGETHQGIFDISFLNSIPNMTISMPKDEVEARQLMDTAFSYNDGPFAIRYPRGEAPGAQVAESN--TLIPIGKWETIIQPIDAVILTFGPTIRLALKAAEQLELEGYHVGVINARYIKPLDEALLHQILKQKIPILTVEESLLKGGFGA 545          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ALKOO (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkaliphilus oremlandii (strain OhILAs) GN=dxs PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.056e-39
Identity = 87/198 (43.94%), Postives = 125/198 (63.13%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILM-EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSL 588
            LA+ G KPF A+YS+F QR YDQV+HD  +Q LPV + +DRAGLVG DG TH G+ DI+F+SC+PN+  MAP D  EL  MV  AA   + P   R+PRG+   + +      +PL +GKG I    G+ V IL  G+  +  +     L+  +I  T+ + RF KP+D +LI ++  +H+I+ T+E+ S +GGFG+L
Sbjct:  377 LAANGFKPFFAVYSTFFQRAYDQVIHDACIQDLPVTYLIDRAGLVGNDGETHHGSLDISFLSCIPNLTFMAPKDGIELSEMVRFAAK-HNGPVAIRYPRGH---SNMDSQENFSPLALGKGEITYHSGNDVLILALGTFNKMGLEICKDLEENNIFSTLMNPRFIKPMDEELIVEMVQKHKIIYTIEDNSKIGGFGTL 570          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_DEHE19.655e-4145.921-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc... [more]
DXS_PARD81.261e-4042.351-deoxy-D-xylulose-5-phosphate synthase OS=Parabac... [more]
DXS_BLOFL1.261e-4044.221-deoxy-D-xylulose-5-phosphate synthase OS=Blochma... [more]
DXS_ALCBS1.647e-4047.961-deoxy-D-xylulose-5-phosphate synthase OS=Alcaniv... [more]
DXS_SACD22.809e-4045.831-deoxy-D-xylulose-5-phosphate synthase OS=Sacchar... [more]
DXS_CLOP14.792e-4044.391-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CLOPE1.394e-3943.881-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_LISMF2.378e-3944.391-deoxy-D-xylulose-5-phosphate synthase OS=Listeri... [more]
DXS_LISMC2.378e-3944.391-deoxy-D-xylulose-5-phosphate synthase OS=Listeri... [more]
DXS_ALKOO4.056e-3943.941-deoxy-D-xylulose-5-phosphate synthase OS=Alkalip... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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