CB322119

Overview
NameCB322119
Unique NameCB322119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB322119 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 53/158 (33.54%), Postives = 75/158 (47.47%), Query Frame = 2 
Query:  245 IGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFACGPVH------FQCNSWVQSTKDHPGKRIFF-ANQPYLPSETPVGLRALREKELKDIRGTGKGVRKLSDRIYDYDV 697
            +G  + LELV +E+DP+T    +  + +          + +   Y A F         GA+ + N H  E  L  + I      P        F C SW+  +   P KR FF   + Y+PS+TP G+  LR+ EL+ +RG G G RK  DRIYDYDV
Sbjct:  109 LGSWLTLELVSSELDPKTG---QEHDVISGKLKHSRETEKDYDLYEAIFTCRHRLAPSGAVRLVNYHHTEMLLGEVKIFPAGEDPTKSSAVTLFHCQSWIDPSHCSPDKRTFFPVEKSYIPSQTPKGVEKLRKSELEALRGNGCGERKKHDRIYDYDV 263
The following BLAST results are available for this feature:
BLAST of CB322119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX22_HORVU1.334e-1633.54Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]

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Properties
Property NameValue
Genbank descriptionEST0230 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB100 similar to lipoxygenase (acc# CAC43237), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322119 ID=CB322119; Name=CB322119; organism=Citrus sinensis; type=EST; length=697bp
ACCCGTGCAACAGAGAAGAGTGCATTCGAGGAAAGCAGGAGCAGCAGGTG
TGAGGAGGGGGATTAATAATCCTGTGGCTGCTCTAAGTGAAGATTTGGTA
AAAGGAGCTGCTTCCACTGCCGTGCCCGGGGCTGCTGAAAAGCCAGTGAA
GTTTAAGGTGAGGGCTGTGCTGACGGTGAAGAAGAACATCAAAGAAGATT
TCAAAGAGACCCTTGTTAATCAGTTTGATGTTTTAACTGAAAAGATTGGC
AGAAATGTCGTTCTGGAACTTGTCGGCACTGAAGTTGATCCCAGAACAAA
GGGACCAAAGAAAAGCAGAGAAGCAGTTCTGAAGGATTGGTCAAAGAAAT
CAAATGTTAAGGCTGAACGGGTCCATTACACGGCTGAATTTTTAGTGGAC
TCAAATTTTGGGACGCCTGGTGCAATCACAGTTGCCAATAAGCACCAAAA
GGAATTCTTTTTGGAAACTATTACCATTGAAGGTTTTGCTTGTGGCCCTG
TTCATTTCCAATGCAATTCTTGGGTTCAATCCACAAAAGATCATCCTGGA
AAAAGGATATTCTTCGCTAATCAGCCATATTTACCAAGTGAGACGCCAGT
TGGGCTTAGAGCACTAAGGGAGAAAGAGCTCAAAGACATCAGAGGCACAG
GCAAAGGAGTTAGAAAATTATCGGACAGAATTTATGACTATGATGTG
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