CB322132

Overview
NameCB322132
Unique NameCB322132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length311
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: HFM1_XENTR (Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis GN=hfm1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 2
Query:    5 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            VL +T+TLA GVNLPAH VI+K T  Y    G + E S  DI+QM+GRAGRPQ+DS    +I+T  S    Y+ +++    IES     L + LNAEI L T
Sbjct:  478 VLFTTSTLAMGVNLPAHLVIVKSTMHY--VSGMFQEYSETDILQMIGRAGRPQFDSTATAVIMTRLSTKEKYVHMLDGADTIESSLHKHLVEHLNAEIALHT 577          
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: HFM1_HUMAN (Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 2
Query:    5 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            VL +T+TLA GVNLPAH V+IK T  Y    G + E S  DI+QM+GRAGRPQ+D+    +I+T  S    Y+ ++  +  +ES     L + LNAEIVL T
Sbjct:  609 VLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHT 708          
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: HFM1_YEAST (ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae GN=HFM1 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.109e-14
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 2
Query:    5 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            +L ST+TLA GVNLPA+ VIIKGT+ +N  +    E S LD++QM+GRAGRPQ++++G  +I+T     + Y +L++    +ES     L + L AE  L T
Sbjct:  447 ILCSTSTLAVGVNLPAYLVIIKGTKSWNSSE--IQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLET 546          
The following BLAST results are available for this feature:
BLAST of CB322132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HFM1_XENTR4.072e-1748.04Probable ATP-dependent DNA helicase HFM1 OS=Xenopu... [more]
HFM1_HUMAN1.547e-1647.06Probable ATP-dependent DNA helicase HFM1 OS=Homo s... [more]
HFM1_YEAST1.109e-1444.12ATP-dependent DNA helicase MER3 OS=Saccharomyces c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0245 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB160 similar to U5 small nuclear ribonucleoprotein helicase (acc# NP_173520), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322132 ID=CB322132; Name=CB322132; organism=Citrus sinensis; type=EST; length=311bp
ACAGGTATTGGTTTCCACTGCAACCCTTGCTTGGGGAGTGAACTTGCCTG
CTCACACTGTGATCATCAAAGGAACTCAGATTTACAATCCAGAGAAAGGG
GCATGGACAGAGCTCAGTCCTCTGGATATCATGCAGATGCTTGGTCGTGC
TGGAAGGCCTCAGTATGATTCATATGGGGAAGGGATTATCATTACTGGTC
ACTCTGAACTTCGCTACTATCTTTCTTTGATGAATCAGCAGCTCCCTATT
GAAAGTCAGTTTGTGTCCAAGCTGGCTGATCAGTTGAATGCAGAAATTGT
CCTTGGAACTG
back to top