CB322135

Overview
NameCB322135
Unique NameCB322135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_NASOF (Photosystem Q(B) protein OS=Nasturtium officinale GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_NANDO (Photosystem Q(B) protein OS=Nandina domestica GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAAAAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_MORIN (Photosystem Q(B) protein OS=Morus indica GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_MANES (Photosystem Q(B) protein OS=Manihot esculenta GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_LACSA (Photosystem Q(B) protein OS=Lactuca sativa GN=psbA PE=3 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_JASNU (Photosystem Q(B) protein OS=Jasminum nudiflorum GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_HELAN (Photosystem Q(B) protein OS=Helianthus annuus GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_GOSHI (Photosystem Q(B) protein OS=Gossypium hirsutum GN=psbA PE=3 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_GOSBA (Photosystem Q(B) protein OS=Gossypium barbadense GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_EUCGG (Photosystem Q(B) protein OS=Eucalyptus globulus subsp. globulus GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA_NASOF2.266e-9090.96Photosystem Q(B) protein OS=Nasturtium officinale ... [more]
PSBA_NANDO2.266e-9090.96Photosystem Q(B) protein OS=Nandina domestica GN=p... [more]
PSBA_MORIN2.266e-9090.96Photosystem Q(B) protein OS=Morus indica GN=psbA P... [more]
PSBA_MANES2.266e-9090.96Photosystem Q(B) protein OS=Manihot esculenta GN=p... [more]
PSBA_LACSA2.266e-9090.96Photosystem Q(B) protein OS=Lactuca sativa GN=psbA... [more]
PSBA_JASNU2.266e-9090.96Photosystem Q(B) protein OS=Jasminum nudiflorum GN... [more]
PSBA_HELAN2.266e-9090.96Photosystem Q(B) protein OS=Helianthus annuus GN=p... [more]
PSBA_GOSHI2.266e-9090.96Photosystem Q(B) protein OS=Gossypium hirsutum GN=... [more]
PSBA_GOSBA2.266e-9090.96Photosystem Q(B) protein OS=Gossypium barbadense G... [more]
PSBA_EUCGG2.266e-9090.96Photosystem Q(B) protein OS=Eucalyptus globulus su... [more]

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Properties
Property NameValue
Genbank descriptionEST0248 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB164 similar to photosystem II protein D1 (acc# NP_084778), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322135 ID=CB322135; Name=CB322135; organism=Citrus sinensis; type=EST; length=594bp
GCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAAACC
AAGATTTTACCATGACTGCAATTTTAGAGAGACGCGAAAGCGAACGCCTA
TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACAT
TGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTG
TATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATT
CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGG
TGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATAT
GGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAG
CTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA
GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT
ATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATC
GGTCAAGGAAGTTTTTCTGATGGTGTGCCTCTAGGAATCTCTGG
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