CB322135

Overview
NameCB322135
Unique NameCB322135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_BARVE (Photosystem Q(B) protein OS=Barbarea verna GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_ATRBE (Photosystem Q(B) protein OS=Atropa belladonna GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_ARATH (Photosystem Q(B) protein OS=Arabidopsis thaliana GN=psbA PE=1 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_ARAHI (Photosystem Q(B) protein OS=Arabis hirsuta GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_AMAHY (Photosystem Q(B) protein OS=Amaranthus hybridus GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_AETGR (Photosystem Q(B) protein OS=Aethionema grandiflora GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_AETCO (Photosystem Q(B) protein OS=Aethionema cordifolium GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_CUSRE (Photosystem Q(B) protein OS=Cuscuta reflexa GN=psbA PE=3 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 2.960e-90
Identity = 160/177 (90.40%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNI+SGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIVSGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_PEA (Photosystem Q(B) protein OS=Pisum sativum GN=psbA PE=1 SV=3)

HSP 1 Score: 330.487 bits (846), Expect = 3.866e-90
Identity = 160/177 (90.40%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERR+SE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRDSENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
[Close]
BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_LEPVR (Photosystem Q(B) protein OS=Lepidium virginicum GN=psbA PE=3 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 5.049e-90
Identity = 160/177 (90.40%), Postives = 162/177 (91.53%), Query Frame = 2 
Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRE+E LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRETESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177
The following BLAST results are available for this feature:
BLAST of CB322135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PSBA_BARVE2.266e-9090.96Photosystem Q(B) protein OS=Barbarea verna GN=psbA... [more]
PSBA_ATRBE2.266e-9090.96Photosystem Q(B) protein OS=Atropa belladonna GN=p... [more]
PSBA_ARATH2.266e-9090.96Photosystem Q(B) protein OS=Arabidopsis thaliana G... [more]
PSBA_ARAHI2.266e-9090.96Photosystem Q(B) protein OS=Arabis hirsuta GN=psbA... [more]
PSBA_AMAHY2.266e-9090.96Photosystem Q(B) protein OS=Amaranthus hybridus GN... [more]
PSBA_AETGR2.266e-9090.96Photosystem Q(B) protein OS=Aethionema grandiflora... [more]
PSBA_AETCO2.266e-9090.96Photosystem Q(B) protein OS=Aethionema cordifolium... [more]
PSBA_CUSRE2.960e-9090.40Photosystem Q(B) protein OS=Cuscuta reflexa GN=psb... [more]
PSBA_PEA3.866e-9090.40Photosystem Q(B) protein OS=Pisum sativum GN=psbA ... [more]
PSBA_LEPVR5.049e-9090.40Photosystem Q(B) protein OS=Lepidium virginicum GN... [more]

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Properties
Property NameValue
Genbank descriptionEST0248 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB164 similar to photosystem II protein D1 (acc# NP_084778), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322135 ID=CB322135; Name=CB322135; organism=Citrus sinensis; type=EST; length=594bp
GCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAAACC
AAGATTTTACCATGACTGCAATTTTAGAGAGACGCGAAAGCGAACGCCTA
TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACAT
TGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTG
TATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATT
CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGG
TGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATAT
GGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAG
CTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA
GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT
ATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATC
GGTCAAGGAAGTTTTTCTGATGGTGTGCCTCTAGGAATCTCTGG
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