CB322135 | Citrus Genome Database

Overview


Name	CB322135
Unique Name	CB322135
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	594

Libraries


Library Name	Type
Mature leaf blade cDNA subtraction library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_DIOEL (Photosystem Q(B) protein OS=Dioscorea elephantipes GN=psbA PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.125e-89
Identity = 160/177 (90.40%), Postives = 161/177 (90.96%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_CERDE (Photosystem Q(B) protein OS=Ceratophyllum demersum GN=psbA PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.125e-89
Identity = 160/177 (90.40%), Postives = 161/177 (90.96%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESASLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_CALFG (Photosystem Q(B) protein OS=Calycanthus floridus var. glaucus GN=psbA PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.125e-89
Identity = 160/177 (90.40%), Postives = 161/177 (90.96%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_AGRST (Photosystem Q(B) protein OS=Agrostis stolonifera GN=psbA PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.125e-89
Identity = 160/177 (90.40%), Postives = 161/177 (90.96%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_ACOCL (Photosystem Q(B) protein OS=Acorus calamus GN=psbA PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.125e-89
Identity = 160/177 (90.40%), Postives = 161/177 (90.96%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_MEDSA (Photosystem Q(B) protein OS=Medicago sativa GN=psbA PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 1.919e-89
Identity = 159/177 (89.83%), Postives = 161/177 (90.96%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERR+SE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNII GAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRDSETLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIICGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_LEMMI (Photosystem Q(B) protein OS=Lemna minor GN=psbA PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 1.919e-89
Identity = 158/177 (89.27%), Postives = 161/177 (90.96%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRES  LWGRFCNW+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGA+IPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESTSLWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAVIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_VICFA (Photosystem Q(B) protein OS=Vicia faba GN=psbA PE=3 SV=2)

HSP 1 Score: 327.791 bits (839), Expect = 2.506e-89
Identity = 158/177 (89.27%), Postives = 161/177 (90.96%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERR+SE LWGRFCNWIT+TENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSA IGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRDSENLWGRFCNWITTTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAVIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIVVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_CHLSC (Photosystem Q(B) protein OS=Chloranthus spicatus GN=psbA PE=3 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 2.506e-89
Identity = 159/177 (89.83%), Postives = 161/177 (90.96%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRE+  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRETTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_ILLOL (Photosystem Q(B) protein OS=Illicium oligandrum GN=psbA PE=3 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 3.273e-89
Identity = 159/177 (89.83%), Postives = 160/177 (90.40%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MT ILERRES  LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTVILERRESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

The following BLAST results are available for this feature:

BLAST of CB322135 vs. ExPASy Swiss-Prot

BLAST of CB322135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227


Match Name	E-value	Identity	Description
PSBA_DIOEL	1.125e-89	90.40	Photosystem Q(B) protein OS=Dioscorea elephantipes...	[more]
PSBA_CERDE	1.125e-89	90.40	Photosystem Q(B) protein OS=Ceratophyllum demersum...	[more]
PSBA_CALFG	1.125e-89	90.40	Photosystem Q(B) protein OS=Calycanthus floridus v...	[more]
PSBA_AGRST	1.125e-89	90.40	Photosystem Q(B) protein OS=Agrostis stolonifera G...	[more]
PSBA_ACOCL	1.125e-89	90.40	Photosystem Q(B) protein OS=Acorus calamus GN=psbA...	[more]
PSBA_MEDSA	1.919e-89	89.83	Photosystem Q(B) protein OS=Medicago sativa GN=psb...	[more]
PSBA_LEMMI	1.919e-89	89.27	Photosystem Q(B) protein OS=Lemna minor GN=psbA PE...	[more]
PSBA_VICFA	2.506e-89	89.27	Photosystem Q(B) protein OS=Vicia faba GN=psbA PE=...	[more]
PSBA_CHLSC	2.506e-89	89.83	Photosystem Q(B) protein OS=Chloranthus spicatus G...	[more]
PSBA_ILLOL	3.273e-89	89.83	Photosystem Q(B) protein OS=Illicium oligandrum GN...	[more]

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Properties


Property Name	Value
Genbank description	EST0248 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB164 similar to photosystem II protein D1 (acc# NP_084778), mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB322135 ID=CB322135; Name=CB322135; organism=Citrus sinensis; type=EST; length=594bp
GCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAAACC
AAGATTTTACCATGACTGCAATTTTAGAGAGACGCGAAAGCGAACGCCTA
TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACAT
TGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTG
TATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATT
CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGG
TGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATAT
GGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAG
CTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA
GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT
ATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATC
GGTCAAGGAAGTTTTTCTGATGGTGTGCCTCTAGGAATCTCTGG