CB322136

Overview
NameCB322136
Unique NameCB322136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length305
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9226 contig Csv1_Contig9226:48..352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.971e-11
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  105 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI 299
            GYDR IT+FSP+GRLFQVEYA +AVK  G T++G++  D V ++  K++  +L++  S+  +F I
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVK-RGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQI 71          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.971e-11
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  105 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI 299
            GYDR IT+FSP+GRLFQVEYA +AVK  G T++G++  D V ++  K++  +L++  S+  +F I
Sbjct:    6 GYDRAITVFSPDGRLFQVEYAREAVK-RGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQI 69          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.575e-11
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  105 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI 299
            GYDR IT+FSP+GRLFQV YA +AVK  G T++GV+ K+ V +  +K++  KL++ +S   +F I
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVK-RGATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQI 72          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.575e-11
Identity = 32/58 (55.17%), Postives = 47/58 (81.03%), Query Frame = 3
Query:  108 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 281
            YDR IT+FSP+GRLFQVEYA +AVK  G T++G++ KD V ++++KKV  +L++ TS+
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVK-KGSTALGIKFKDGVALISEKKVRSRLVEKTSL 64          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.363e-11
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  105 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI 299
            GYDR IT+FSP+GRL+QVEYA +AVK  G T++G++  + V ++  K+V  +LL+  S+  +F I
Sbjct:    8 GYDRAITVFSPDGRLYQVEYAREAVK-RGTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKI 71          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.392e-11
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  105 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI 299
            GYDR IT+FSP+GRLFQV YA +AVK  G T++GV+ KD V +  +K++  +L++  S   +F I
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVK-RGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQI 72          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.392e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3
Query:  105 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI 299
            GYDR IT+FSP+GRLFQVEYA +AVK  G TSIG++  + + +   K+    L++ TS+  +F I
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVK-RGTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKI 71          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.736e-11
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  105 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI 299
            GYDR ITIFSP+G L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-KGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLI 72          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.736e-11
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  105 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI 299
            GYDR ITIFSP+G L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-KGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLI 72          
BLAST of CB322136 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.736e-11
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  105 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI 299
            GYDR ITIFSP+G L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-KGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLI 72          
The following BLAST results are available for this feature:
BLAST of CB322136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PSMA_METBF1.971e-1147.69Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METAC1.971e-1147.69Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_THEON2.575e-1149.23Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_PICTO2.575e-1155.17Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSMA_METMJ3.363e-1147.69Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSMA_PYRAB4.392e-1149.23Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_METS34.392e-1149.23Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSMA_SULIY5.736e-1150.77Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN5.736e-1150.77Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM5.736e-1150.77Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionEST0250 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB169 similar to proteasome subunit alpha type 6 (acc# CAB39975), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322136 ID=CB322136; Name=CB322136; organism=Citrus sinensis; type=EST; length=305bp
ACGAAGTGCGGATTGATCCGACAAGTAGAACTGCGTGAAGAAGAAAATTG
AAAGAGAGGAATCACTGTAGCGTATAATCAACAATGAGTATAGGAAGTGG
AGGAGGATACGATCGTCATATTACAATTTTTTCGCCTGAGGGTCGTCTCT
TTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCT
ATTGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGT
CCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCA
CAAAG
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