CB322146

Overview
NameCB322146
Unique NameCB322146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_AZOC5 (ATP synthase gamma chain OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  269 STQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLG----------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEK 589
            S + +RNR+ SVK  QKITKAM+MV A+KLR  Q+ AE +R   +   ++LG          DTP     T   +K++++  +S++GLCG  N+  V+  +    L  G  K+ K+  +G K
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQMAAEAARPYAERMDSVLGNIASGVTLSADTPLLLSGTGKDEKHLLLVCTSERGLCGAFNTNIVRAVRERANLLIGQGKDVKFFCVGRK 124          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_HALOH (ATP synthase gamma chain OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 42/118 (35.59%), Postives = 69/118 (58.47%), Query Frame = 2
Query:  281 VRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDT----------PTVDAKKN---VIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 595
            ++ R+ S+KN QKITKAMKMV A+KL+  Q+KAEN+R  ++   ++L D           P +  K+N   + V I++D+GLCG  N+   ++   + KL    D+ N ++ +G K +
Sbjct:    7 IKRRINSIKNTQKITKAMKMVAAAKLKKAQLKAENARPFFEKTRSILIDVARRTRQKDIHPLLREKENNRSLFVMITADRGLCGAYNA---RVIDRVKKLTEKEDEVN-FLAVGRKGR 120          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_HUMAN (ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.745e-11
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  257 VRSIST-QIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604
            VR+++T + +  R+KS+KNIQKITK+MKMV A+K    + + + +R       AL          D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGIL 141          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_PONAB (ATP synthase subunit gamma, mitochondrial OS=Pongo abelii GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  257 VRSIST-QIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604
            VR+++T + +  R+KS+KNIQKITK+MKMV A+K    + + + +R       AL          D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGVGDKIRGIL 141          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_PHEZH (ATP synthase gamma chain OS=Phenylobacterium zucineum (strain HLK1) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  269 STQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGD--------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 595
            S + +RNR+ SVK  QKITKAM+MV A+KLR  Q  A+N+R   Q   +++ +                T   +++++V  +SD+GL GG NS  V+ ++      S   K+ + + +G KA+
Sbjct:    3 SLKEMRNRIGSVKATQKITKAMQMVAAAKLRKAQDAAQNARPYAQRMASVIANLAAGVSGDGAPKLLAGTGSDRRHLVVVATSDRGLAGGFNSAIVRAARERINALSAEGKDVRVITIGRKAR 125          
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 2
Query:  269 STQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLG----------DTPTVDA-----KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604
            S + +RNR+ SVK  QKITKAM+MV A+KLR  Q  AEN+R   +   A+LG          +TP + A     + +++V  ++++GLCG  NS+  ++++   +      K  K + +G+K   IL
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQNAAENARPYAERMAAVLGNLATNLTPGAETPRLLAGTGADRVHLLVVCTAERGLCGAFNSSIARLARDHARRLVAEGKTVKIICVGKKGYDIL 129          
The following BLAST results are available for this feature:
BLAST of CB322146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ATPG_AZOC52.195e-1136.07ATP synthase gamma chain OS=Azorhizobium caulinoda... [more]
ATPG_HALOH2.867e-1135.59ATP synthase gamma chain OS=Halothermothrix orenii... [more]
ATPG_HUMAN3.745e-1137.50ATP synthase subunit gamma, mitochondrial OS=Homo ... [more]
ATPG_PONAB4.891e-1137.50ATP synthase subunit gamma, mitochondrial OS=Pongo... [more]
ATPG_PHEZH4.891e-1133.33ATP synthase gamma chain OS=Phenylobacterium zucin... [more]
ATPG_METNO6.388e-1134.65ATP synthase gamma chain OS=Methylobacterium nodul... [more]

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Properties
Property NameValue
Genbank descriptionEST0262 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB181 similar to ATP synthase, gamma subunit (acc# P26360), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322146 ID=CB322146; Name=CB322146; organism=Citrus sinensis; type=EST; length=605bp
AAATCGGCAAAAGTGAAAATAGGTGAAATTTGTTCGACACCTGAGCTCGC
ACGACCCAAACAGAACATAAAGCTTTGGATCTGCAGCGTTCAAAATAAAA
TATTTCTAGGGTTTCCTACGACGACGGTTCATCAGAAAAATGGCGATGGC
TGCTCTGAGGCGCGAAGGCCGGCGATTCGCCACCCCTCTCATCTCCCCAC
GTCCAATCGCCGCAATCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCT
CTGGGAGTCCGGTCTATTTCAACTCAAATTGTTAGAAACCGGATGAAGAG
TGTTAAGAATATTCAGAAAATTACAAAGGCTATGAAGATGGTTACAGCCT
CAAAGTTAAGAGCAATTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGG
CAGCCATTCACTGCACTTCTTGGTGACACTCCCACTGTTGATGCTAAGAA
GAATGTTATTGTGACCATCTCTTCTGACAAAGGTCTATGTGGTGGAATTA
ACTCTACTGCAGTTAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGT
CCCGACAAAGAAAACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAAT
ATTAG
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