CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.727e-18
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNRLDE++VFR LTK ++++I +I L  +  RL  K I L+            GY+P +GARPLRR I R LE  +A+K+LA E+KE
Sbjct:  740 FRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 831          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.199e-16
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEFLNR+D++IVF QLT+ E+  + D+M+  V  +LK+KD+ L             G++P  GARPLRR I R +ED ++EK+L  E+
Sbjct:  705 FRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEV 794          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.199e-16
Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEFLNR+D++IVF QL++ E+  + D+M+  V ++LK KD+ L+            G++P  GARPLRR I R +ED ++EK+L  E+
Sbjct:  705 FRPEFLNRIDDIIVFHQLSRDEIIRMVDLMISRVANQLKVKDMTLELTNKAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEV 794          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.199e-16
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEFLNR+D++IVF QLT+ E+  + D+M+  V  +LK+KD+ L             G++P  GARPLRR I R +ED ++EK+L  E+
Sbjct:  705 FRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEV 794          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_FUSNN (Chaperone protein clpB OS=Fusobacterium nucleatum subsp. nucleatum GN=clpB PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.489e-16
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNR+DE+I F+ L    +KEI  + LK++ ++LK K I L+             Y+P YGARPLRR I R +E S+A+K+LA E+ E
Sbjct:  748 FKPEFLNRIDEIITFKALDLPAIKEIVKLSLKDLENKLKPKHITLEFSDKMVDYLANNAYDPHYGARPLRRYIQREIETSLAKKILANEVHE 839          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.772e-16
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            F+PEFLNR+D++I+FR L+   +K+I DI L++V +RL+ ++I L+            GY+P YGARPL+R I  +LE  +A+K++A EI
Sbjct:  757 FKPEFLNRVDDIIMFRPLSSEGIKKIIDIFLRDVENRLRERNITLEVTDRAKEILAEEGYDPVYGARPLKRYISNVLETEIAKKIIAGEI 846          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: HSP78_CANAL (Heat shock protein 78, mitochondrial OS=Candida albicans GN=HSP78 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.015e-15
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSG 344
            + PEFLNR+D+++VF +L+K  +KEI DI L+E+ DRL  K I LQ            GY+P+YGARPL R + + L D +A +++  +++E               V N S G
Sbjct:  682 YAPEFLNRIDDIVVFNRLSKTALKEILDIRLREIGDRLVDKRIILQLTDEAKTLLCDMGYDPTYGARPLNRVLRKKLLDPLAMRLIKGQVQENETVKVEVKDHKIYVVPNHSEG 795          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.015e-15
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 275
            FRPE LNR+DE+++FRQL K ++ EI ++ML+++  RL    + L+            GY+P+YGARPLRR +  ++ED ++E  LA   K
Sbjct:  820 FRPELLNRIDEIVIFRQLEKAQMMEILNLMLQDLKSRLVALGVGLEVSEPVKELICKQGYDPAYGARPLRRTVTEIVEDPLSEAFLAGSFK 910          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.326e-15
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE IVF  L K  +K+I  +M++++  RLK +D+ L             G++P YGARPLRR+I + +ED ++E++L   I++
Sbjct:  700 FRPEFLNRIDETIVFHSLEKEHMKDIVTLMVQQLQKRLKEQDLHLSLTDKAIEKIANEGFDPEYGARPLRRSIQKNIEDLLSEELLRGAIEK 791          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+D++IVF +LTK E+KEI  +M+ ++ +RL  ++I +             GY+P YGARPL RAI + +ED+++E +L
Sbjct:  697 FRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELIL 782          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPB_THET23.727e-1850.00Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPC_MYCTU1.199e-1645.56Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCLE1.199e-1644.44Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCBO1.199e-1645.56Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_FUSNN3.489e-1645.65Chaperone protein clpB OS=Fusobacterium nucleatum ... [more]
CLPB_CLOPE7.772e-1644.44Chaperone protein clpB OS=Clostridium perfringens ... [more]
HSP78_CANAL1.015e-1537.72Heat shock protein 78, mitochondrial OS=Candida al... [more]
ERD1_ARATH1.015e-1541.76ERD1 protein, chloroplastic OS=Arabidopsis thalian... [more]
CLPB_OCEIH1.326e-1542.39Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPC_STAAW2.261e-1545.35ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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