CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BIFLO (Chaperone protein clpB OS=Bifidobacterium longum GN=clpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNRLD++++F  LT+ E+  I DI +  V  RL  + I L             GY+P+YGARPLRR +   + D +A  +LA ++ +
Sbjct:  758 FKPEFLNRLDDIVMFHPLTREELGGIVDIQVAGVSQRLTDRRITLDVTDSAREWLANTGYDPAYGARPLRRLVQTEVGDQLARMLLAGKVHD 849          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNE7 (Chaperone protein clpB 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLARE 269
            FRPEFLNR+D+ I+F+ L++ ++++I DI L+ +   L  + I L             GY+P YGARPL+RAI RL+E+ +A  +L ++
Sbjct:  762 FRPEFLNRIDDTILFQPLSRGQLQQIVDIQLQRLKRLLAEQAIALNVTPAAAANLADRGYDPVYGARPLKRAIQRLIENPVASLILEQQ 850          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_RICBR (Chaperone protein clpB OS=Rickettsia bellii (strain RML369-C) GN=clpB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.372e-12
Identity = 35/90 (38.89%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            F+PEFLNRLDE+I+F +L +  + +I  I L+ +   L  ++I L+            GY+PS+GARPL+R I R +++++A+ +LA E+
Sbjct:  748 FKPEFLNRLDEIILFHRLNQSNIHDIVKIQLEGLKKILSAQNIILEFDEPALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEV 837          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.372e-12
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+DE I+F  L K ++++I  + ++ +  RL  + I L             GY+P YGARPL+RAI + LE  +A+ +L
Sbjct:  755 FRPEFLNRVDEFIIFHSLRKDQLRQIVQLQVQRLQQRLSDRHITLSLTEKAIDFLAEVGYDPVYGARPLKRAIQKQLETPIAKAIL 840          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: HSP78_SCHPO (Heat shock protein 78, mitochondrial OS=Schizosaccharomyces pombe GN=hsp78 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.792e-12
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 275
            + PEFLNR+D+ IVF +L++  +++I ++ L EV  RL  + I L             GY+P+YGARPL R I + + ++MA K++  EIK
Sbjct:  683 YPPEFLNRIDDQIVFNKLSEKNLEDIVNVRLDEVQQRLNDRRIILTVTEAARKWLAEKGYSPAYGARPLNRLIQKRILNTMAMKIIQGEIK 773          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPA (Chaperone protein clpB OS=Mycobacterium paratuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.792e-12
Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEF+NRLD++I+F  L   E+ +I DI L ++  RL  + + L+            G++P YGARPLRR + + + D +A+++LA ++ +
Sbjct:  739 FKPEFINRLDDVIIFHGLEPGELVQIVDIQLAQLQKRLAQRRLTLEVSLPAKQWLAHRGFDPVYGARPLRRLVQQAIGDQLAKQLLAGQVHD 830          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.340e-12
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPEF+NR+DE+++F  L + ++  I DI L  +  RL  +++ +             GY+P YGARPL+RAI R +E+ +A+ +L+
Sbjct:  747 FRPEFVNRIDEVVIFEPLARDQIAGITDIQLGRLRKRLAERELTMVLSPEALDKLIAVGYDPVYGARPLKRAIQRWIENPLAQLILS 833          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPE_LACLA (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. lactis GN=clpE PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAE 251
            F PEF+NR D +I F  L+K  + +I D+ML EV +++   DI L             GYNP+ GARPLRR I   +EDS+A+
Sbjct:  626 FSPEFMNRFDGIIEFSALSKENLLKIVDLMLDEVNEQIGRNDIHLSVTQAAKEKLVDLGYNPAMGARPLRRTIQENIEDSIAD 708          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            FRPEFLNR+DE +VF  L +  +K IA I L  + +R++     L+            G++P YGARPL+RAI + +E+ +A+ +LA  +
Sbjct:  749 FRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLANRMEEHGYPLEVSDKALELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSV 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_RICPR (Chaperone protein clpB OS=Rickettsia prowazekii GN=clpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 272
            F+PEFLNRLDE+I+F +L +  + +I  I L  +   L  ++I L+            GY+PS+GARPL+R I R +++++A+ +LA EI
Sbjct:  748 FKPEFLNRLDEIILFHRLNRNNIHDIVKIQLGSLKKILLQQNIILEFDESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEI 837          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPB_BIFLO1.050e-1239.13Chaperone protein clpB OS=Bifidobacterium longum G... [more]
CLPB2_SYNE71.050e-1240.45Chaperone protein clpB 2 OS=Synechococcus elongatu... [more]
CLPB_RICBR1.372e-1238.89Chaperone protein clpB OS=Rickettsia bellii (strai... [more]
CLPB1_THEEB1.372e-1240.70Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
HSP78_SCHPO1.792e-1239.56Heat shock protein 78, mitochondrial OS=Schizosacc... [more]
CLPB_MYCPA1.792e-1235.87Chaperone protein clpB OS=Mycobacterium paratuberc... [more]
CLPB_PSESM2.340e-1237.93Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]
CLPE_LACLA3.056e-1243.37ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_VIBVU3.056e-1238.89Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB_RICPR3.056e-1240.00Chaperone protein clpB OS=Rickettsia prowazekii GN... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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