CB322151

Overview
NameCB322151
Unique NameCB322151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 32/92 (34.78%), Postives = 55/92 (59.78%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE ++F+ L   ++  I +++L  +  RL  + I+++             Y+P YGARPLRR +   +E  +A K++A E+++
Sbjct:  756 FRPEFLNRVDETVLFKPLLPAQIARIVELLLGRLRGRLAERKIDIRLGDVARDFIAKAAYDPVYGARPLRRYLQHNIETPLARKLIAGELRD 847          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BORPE (Chaperone protein clpB OS=Bordetella pertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+DE++VF  L    ++ IA I LK + +RL+ +++ L             G++P +GARPL+RAI + +E+ +A+ +L
Sbjct:  754 FRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSGFDPVFGARPLKRAIQQQIENPVAKLIL 839          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BORBR (Chaperone protein clpB OS=Bordetella bronchiseptica GN=clpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+DE++VF  L    ++ IA I LK + +RL+ +++ L             G++P +GARPL+RAI + +E+ +A+ +L
Sbjct:  754 FRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSGFDPVFGARPLKRAIQQQIENPVAKLIL 839          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            FRPEFLNR+DE I+F  L K ++++I  I L  + +RL  + + L             G++P YGARPL+R I R LE ++A+ +L  +  +
Sbjct:  756 FRPEFLNRVDETIIFHSLRKDQLQQIVRIQLHRLEERLSDRKLSLSMSPEAIDFLVEIGFDPVYGARPLKRVIQRELETAIAKAILRGQFSD 847          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPE_LACLM (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAE 251
            F PEF+NR D +I F  L+K  + +I D+ML EV +++   DI L             GYNP+ GARPLRR I   +EDS+A+
Sbjct:  626 FSPEFMNRFDGIIEFSALSKENLLKIVDLMLDEVNEQIGRNDIHLSVTQAAKEKLVDLGYNPAMGARPLRRIIQENIEDSIAD 708          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_STRCO (Chaperone protein clpB OS=Streptomyces coelicolor GN=clpB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12
Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNRLD+++VF  L++ E+  IA + +  +  RL  + + L+            G +P+YGARPLRR +   + D +A ++L+ EIK+
Sbjct:  751 FKPEFLNRLDDLVVFSALSQEELSRIARLQINGLARRLAERRLTLEVTDEALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAREILSGEIKD 842          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_STRAL (Chaperone protein clpB OS=Streptomyces albus G GN=clpB PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12
Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 278
            F+PEFLNRLD++++F  L + E+  IA + +  +  RL  + + L             G++P+YGARPLRR I   + D +A+++LA E+++
Sbjct:  746 FKPEFLNRLDDLVIFSALDEDELARIAGLQIAGLARRLADRRLSLDVTPEALAWLAKEGFDPAYGARPLRRLIQTAIGDRLAKEILAGEVRD 837          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+DE++VF  L +  ++ IA I L+ +  RL   D+ L+            GY+P +GARPL+RAI + +E+ +A  +L
Sbjct:  751 FRPEFLNRIDEVVVFHALDQGHIESIARIQLQRLAARLAHMDLTLEISDPAVAKLASAGYDPVFGARPLKRAIQQQIENPVARMIL 836          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLA 263
            FRPE +NR+DE++VF  L +  ++ IA I LK +  RL+ +++ L             G++P YGARPL+RAI   +E+ +A+ +LA
Sbjct:  752 FRPEMINRIDEVVVFHGLDQANIRSIAKIQLKGLEKRLEKQNLRLAVSDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLA 838          
BLAST of CB322151 vs. ExPASy Swiss-Prot
Match: CLPB_BORPA (Chaperone protein clpB OS=Bordetella parapertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 3
Query:    3 FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKML 260
            FRPEFLNR+DE++VF  L    ++ IA I LK + +RL+ +++ L             G++P +GARPL+RA+ + +E+ +A+ +L
Sbjct:  754 FRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSGFDPVFGARPLKRAVQQQIENPVAKLIL 839          
The following BLAST results are available for this feature:
BLAST of CB322151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CLPB_DESVH3.056e-1234.78Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB_BORPE3.056e-1239.53Chaperone protein clpB OS=Bordetella pertussis GN=... [more]
CLPB_BORBR3.056e-1239.53Chaperone protein clpB OS=Bordetella bronchiseptic... [more]
CLPB1_SYNE73.056e-1238.04Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPE_LACLM3.992e-1243.37ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_STRCO3.992e-1236.96Chaperone protein clpB OS=Streptomyces coelicolor ... [more]
CLPB_STRAL3.992e-1235.87Chaperone protein clpB OS=Streptomyces albus G GN=... [more]
CLPB_RALSO3.992e-1240.70Chaperone protein clpB OS=Ralstonia solanacearum G... [more]
CLPB_NEIMA3.992e-1239.08Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_BORPA3.992e-1238.37Chaperone protein clpB OS=Bordetella parapertussis... [more]

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Properties
Property NameValue
Genbank descriptionEST0268 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB187 similar to ATP-dependent CLP protease ATP-binding subunit (acc# AAA33680), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322151 ID=CB322151; Name=CB322151; organism=Citrus sinensis; type=EST; length=412bp
ACTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGA
CAACTCACCAAGCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGA
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTG
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